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Report for CCDS19024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19024.1 Public Mus musculus 4 Ski 23 108 98 CCDS HistoryNCBI Gene:20481Re-query CCDS DB by CCDS ID:19024.1Re-query CCDS DB by GeneID:20481See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030917.5 ENSMUSP00000030917.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030917.5Link to Ensembl Protein Viewer:ENSMUSP00000030917.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030917Re-query CCDS DB by Protein ID:ENSMUSP00000030917
Original member NCBI NM_011385.2 NP_035515.2 Updated not alive Link to Nucleotide Sequence:NM_011385.2Link to Protein Sequence:NP_035515.2Re-query CCDS DB by Nucleotide ID:NM_011385Re-query CCDS DB by Protein ID:NP_035515
Current member NCBI NM_011385.3 NP_035515.2 Accepted alive Link to Nucleotide Sequence:NM_011385.3Link to Protein Sequence:NP_035515.2Re-query CCDS DB by Nucleotide ID:NM_011385Re-query CCDS DB by Protein ID:NP_035515Link to BLAST:NP_035515.2

Chromosomal Locations for CCDS 19024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155157341 155157529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155157946 155158176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155159288 155159580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155159696 155159958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155160580 155160695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155160834 155160956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155221552 155222520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGGAAGCTGCAGCGGCCGGCCGGGGCGGCTTCCAGCCGCACCCGGGGCTGCAGAAGACGCTGGAGCAGT
TCCACCTGAGCTCCATGAGCTCGCTGGGCGGCCCGGCCGCTTTCTCGGCGCGCTGGGCGCAGGAGGCCTA
CAAGAAGGAGAGCGCCAAGGAGGCGGGTGCGGCCACAGTGCCGGCGCCGGTGCCCACTGCCGCGGAGCCG
CCGCCCGTGCTGCACCTGCCTGCCATCCAGCCGCCGCCGCCCGTGCTTCCCGGGCCCTTCTTCATGCCGT
CGGACCGCTCCACCGAGCGCTGTGAGACCGTGCTGGAAGGGGAGACCATCTCTTGTTTCGTGGTGGGAGG
TGAGAAGCGTCTGTGCCTGCCGCAGATCCTCAACTCGGTGCTGCGCGACTTCTCACTGCAGCAGATCAAC
TCCGTGTGCGATGAGCTGCACATCTACTGCTCGCGCTGCACCGCCGACCAGCTGGAGATCCTCAAAGTCA
TGGGCATCCTGCCCTTCTCCGCGCCCTCCTGCGGGCTCATCACTAAGACGGACGCCGAGCGCCTGTGCAA
CGCGCTGCTCTACGGCGGCGCCTACCCGCCGCCTTGCAAGAAGGAGTTGGCGGCCAGCCTGGCGCTGGGC
CTGGAGCTCAGCGAACGCAGCGTCCGCGTGTACCACGAGTGCTTCGGCAAGTGCAAAGGGCTGCTGGTGC
CCGAGCTGTACAGCAGTCCCAGCGCTGCCTGCATCCAGTGCCTCGACTGCCGCCTCATGTACCCGCCGCA
CAAGTTCGTTGTACACTCGCACAAGGCCCTGGAGAACCGGACCTGCCACTGGGGCTTCGACTCAGCCAAC
TGGCGGGCCTACATCCTGCTGAGCCAGGACTACACGGGCAAGGAGGAGCAGGCCCGCCTTGGCCGCTGCC
TGGACGACGTGAAGGAGAAGTTCGACTATGCCAACAAGTACAAGCGGAGGGTGCCCCGGGTCTCAGAGCC
CCCAGCTTCCATAAGACCCAAAACAGACGACACTTCCTCACAGTCCCCTGCGTCTTCTGAGAAGGACAAG
CAGTCCACTTGGCTGCGGACCTTGGCTGGTTCCTCCAATAAGAGCCTCGGCTGCACTCACCCTCGCCAGC
GCCTTTCTGCTTTCCGGCCCTGGTCCCCTGCAGTGTCTGCGAGTGAGAAAGAGACGTCCCCACACCTCCC
AGCTTTGATTCGAGACAGCTTCTACTCCTACAAGAGCTTTGAGACAGCCGTGGCCCCCAATGTGGCCCTA
GCACCACCAACCCAGCAAAAGGTTGTGAACAGTCCACCCTGCACCACCGTGGTCTCCCGGGCACCAGAGC
CTCTTACTACTTGTATCCAGCCACGAAAACGGAAGCTGACTCTGGACACAGCAGGAGCCCCAGACATGCT
GACACCTGTGGCTGCTGCAGAGGAAGACAAGGATTCTGAGGCCGAGGTTGAAGTTGAAAGCAGAGAGGAG
TTCACCTCCTCCTTGTCCTCGCTGTCCTCTCCGTCCTTTACCTCGTCCAGCTCTGCCAAGGATCTAAGCT
CCCCAGGCATGCATGCTCCGCCCGTGGTTGCCCCCGATGCTGCAGCCCATGTTGATGCCCCAAGTGGGCT
GGAGGCAGAGTTGGAGCACCTGCGGCAAGCCCTGGAGGGTGGCCTGGATACTAAGGAAGCCAAAGAAAAG
TTCCTGCATGAGGTGGTCAAAATGCGAGTTAAGCAAGAGGAAAAGCTGACAGCAGCCCTGCAGGCTAAGC
GCAGCCTGCACCAGGAGCTAGAATTCTTGCGTGTGGCCAAGAAGGAGAAACTGCGGGAAGCCACAGAGGC
CAAGCGCAGTTTGAGGAAAGAGATTGAGCGGCTCCGAGCTGAAAACGAGAAGAAGATGAAAGAGGCCAAC
GAGTCCCGGGTGCGCCTGAAGCGAGAGCTGGAGCAGGCGCGGCAGGTCCGGGTGTGTGACAAGGGCTGCG
AGGCCGGGCGCCTGCGTGCCAAGTACTCAGCCCAGATTGAGGACCTGCAAGCGAAGCTGCAGCATGCGGA
GGCCGACCGCGAGCAGCTTCGAGCTGACCTGCTGCGGGAACGTGAGGCCCGCGAGCATCTGGAGAAGGTG
GTGAGGGAGCTTCAGGAGCAGCTGCGGCCTCGGCCACGGCCTGAGCATCCTGGAGGTGAGAGCAACGCTG
AGCTGGGTCCCTAG

Translation (727 aa):
MEAAAAGRGGFQPHPGLQKTLEQFHLSSMSSLGGPAAFSARWAQEAYKKESAKEAGAATVPAPVPTAAEP
PPVLHLPAIQPPPPVLPGPFFMPSDRSTERCETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQIN
SVCDELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALG
LELSERSVRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSAN
WRAYILLSQDYTGKEEQARLGRCLDDVKEKFDYANKYKRRVPRVSEPPASIRPKTDDTSSQSPASSEKDK
QSTWLRTLAGSSNKSLGCTHPRQRLSAFRPWSPAVSASEKETSPHLPALIRDSFYSYKSFETAVAPNVAL
APPTQQKVVNSPPCTTVVSRAPEPLTTCIQPRKRKLTLDTAGAPDMLTPVAAAEEDKDSEAEVEVESREE
FTSSLSSLSSPSFTSSSSAKDLSSPGMHAPPVVAPDAAAHVDAPSGLEAELEHLRQALEGGLDTKEAKEK
FLHEVVKMRVKQEEKLTAALQAKRSLHQELEFLRVAKKEKLREATEAKRSLRKEIERLRAENEKKMKEAN
ESRVRLKRELEQARQVRVCDKGCEAGRLRAKYSAQIEDLQAKLQHAEADREQLRADLLREREAREHLEKV
VRELQEQLRPRPRPEHPGGESNAELGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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