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Report for CCDS18848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18848.1 Public Mus musculus 4 Aldh4a1 23 108 98 CCDS HistoryNCBI Gene:212647Re-query CCDS DB by CCDS ID:18848.1Re-query CCDS DB by GeneID:212647See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039818.9 ENSMUSP00000043821.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039818.9Link to Ensembl Protein Viewer:ENSMUSP00000043821.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000039818Re-query CCDS DB by Protein ID:ENSMUSP00000043821
Original member Current member NCBI NM_175438.4 NP_780647.3 Accepted alive Link to Nucleotide Sequence:NM_175438.4Link to Protein Sequence:NP_780647.3Re-query CCDS DB by Nucleotide ID:NM_175438Re-query CCDS DB by Protein ID:NP_780647Link to BLAST:NP_780647.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780647.3 562 Q8CHT0 562 100% 0 0

Chromosomal Locations for CCDS 18848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139623139 139623197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139633715 139633808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139633897 139633989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139634664 139634711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139635389 139635544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139636959 139637108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139637186 139637260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139638375 139638562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139640613 139640686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139642077 139642273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139642514 139642561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139643390 139643542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139644112 139644233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139644979 139645097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139648158 139648270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGCTGCCGCTGCCGTCGCTCCGCCGATCCCTGCTGTCCCATGCCTGGAGGGGCGCTGGGCTACGATGGA
AGCACACCTCCTCTCTGAAGGTGACCAATGAGCCCATCTTAGCATTCTCTCAGGGAAGCCCCGAGCGGGA
TGCACTGCAGAAGGCTCTGAAGGACCTGAAGGGCCAGATGGAAGCCATCCCCTGCGTTGTCGGGGACGAG
GAGGTGTGGACCTCCGATATACAGTACCAGTTGTCGCCCTTTAACCATGCACACAAGGTGGCCAAGTTCT
GCTATGCTGATAAGGCCTTGCTCAACAGAGCCATCGATGCTGCCTTGGCTGCCAGGAAAGAGTGGGACCT
GAAGCCCATGGCAGACCGGGCCCAGGTCTTCCTGAAGGCGGCAGATATGCTGAGTGGGCCCCGAAGGGCG
GAAGTCCTTGCCAAGACCATGGTGGGACAGGGCAAGACCGTGATCCAAGCAGAGATCGATGCTGCAGCCG
AACTCATCGACTTCTTCAGGTTCAACGCAAAGTTCGCCGTGGAACTGGAGGGGGAACAGCCCATCAGTGT
GCCACCCAGCACCAACCACACGGTGTACCGGGGACTGGAGGGCTTCGTGGCGGCCATCTCTCCCTTCAAC
TTCACCGCGATTGGAGGCAACCTGGCAGGCGCTCCGGCCTTAATGGGCAACGTGGTTCTGTGGAAGCCCA
GTGACACTGCCATGCTGGCTAGCTACGCCGTCTACCGCATCCTCCGGGAGGCCGGCTTGCCCCCCAACAT
AATCCAGTTTGTGCCAGCCGACGGGCCAACCTTCGGGGACACAGTCACCAGCTCAGAGCACCTTTGTGGC
ATCAATTTTACAGGCAGTGTCCCCACCTTCAAACACCTGTGGAGGCAGGTGGCCCAGAACCTGGACCGGT
TCCGTACCTTCCCACGCTTGGCTGGAGAGTGTGGCGGGAAGAATTTCCATTTTGTGCACAGCTCGGCCGA
CGTGGACAGCGTGGTGAGCGGGACGCTGCGCTCGGCATTCGAGTACGGCGGCCAGAAGTGCTCAGCCTGC
TCGCGCCTCTACGTGCCGAAGTCGCTGTGGCCGCAGATCAAAGGGCGACTGCTGGAGGAACACAGCAGGA
TCAAAGTGGGGGATCCTGCAGAGGACTTTGGGACCTTCTTCTCCGCAGTGATTGATGCCAAGGCCTTTGC
TCGCATTAAGAAGTGGTTGGAGCATGCACGTTCCTCGCCCAGCCTCAGCATCCTGGCAGGGGGCCAGTGT
AACGAGTCAGTGGGTTACTACGTGGAACCATGTATCATTGAGAGCAAGGACCCACAGGAACCCATCATGA
AGGAGGAGATCTTCGGTCCTGTGTTGACAGTATATGTGTACCCAGATGATAAATACAGAGAGACGCTGCA
GCTGGTTGACAGCACTACCAGCTATGGCCTCACGGGGGCAGTGTTCGCCCAGGATAAAGCGATTGTCCAG
GAGGCTACGAGGATGCTGAGGAACGCTGCTGGCAACTTCTACATCAACGATAAGTCTACTGGGTCTGTGG
TGGGCCAGCAGCCCTTCGGGGGCGCCCGGGCCTCAGGAACCAATGACAAGCCAGGAGGTCCCCACTACAT
CTTACGCTGGACATCACCCCAGGTCATCAAGGAGACTCATAAGCCCCTGGGGGACTGGCGATACTCCTAC
ATGCAGTGA

Translation (562 aa):
MLPLPSLRRSLLSHAWRGAGLRWKHTSSLKVTNEPILAFSQGSPERDALQKALKDLKGQMEAIPCVVGDE
EVWTSDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRA
EVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFN
FTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCG
INFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSAC
SRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQC
NESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLQLVDSTTSYGLTGAVFAQDKAIVQ
EATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWRYSY
MQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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