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Report for CCDS18772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18772.1 Public Mus musculus 4 Stmn1 23 108 98 CCDS HistoryNCBI Gene:16765Re-query CCDS DB by CCDS ID:18772.1Re-query CCDS DB by GeneID:16765See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030636.10 ENSMUSP00000030636.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030636.10Link to Ensembl Protein Viewer:ENSMUSP00000030636.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030636Re-query CCDS DB by Protein ID:ENSMUSP00000030636
Original member Current member EBI ENSMUST00000105868.1 ENSMUSP00000101494.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105868.1Link to Ensembl Protein Viewer:ENSMUSP00000101494.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105868Re-query CCDS DB by Protein ID:ENSMUSP00000101494
Original member Current member NCBI NM_019641.4 NP_062615.1 Accepted alive Link to Nucleotide Sequence:NM_019641.4Link to Protein Sequence:NP_062615.1Re-query CCDS DB by Nucleotide ID:NM_019641Re-query CCDS DB by Protein ID:NP_062615Link to BLAST:NP_062615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062615.1 149 P54227 149 100% 0 0

Chromosomal Locations for CCDS 18772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134470163 134470175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134470667 134470839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134472804 134472995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134473332 134473403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGCATCTTCTGATATTCAGGTGAAAGAGCTGGAGAAGCGCGCTTCAGGCCAGGCTTTTGAGCTGATTC
TCAGCCCTCGGTCAAAAGAATCTGTCCCCGATTTCCCCCTTTCCCCCCCAAAGAAGAAGGACCTTTCCCT
GGAGGAAATCCAGAAGAAATTAGAAGCTGCAGAAGAAAGACGCAAGTCTCATGAGGCGGAAGTCTTGAAG
CAGCTCGCGGAGAAGCGGGAGCATGAGAAGGAGGTGCTCCAGAAAGCCATCGAGGAGAACAACAACTTCA
GCAAGATGGCGGAGGAGAAGCTGACCCACAAAATGGAGGCTAACAAAGAGAACCGGGAGGCGCAGATGGC
GGCCAAGCTGGAGCGCTTGCGAGAGAAGGACAAGCACGTGGAAGAGGTGCGGAAGAACAAAGAATCCAAA
GACCCCGCGGATGAGACTGAGGCTGACTAA

Translation (149 aa):
MASSDIQVKELEKRASGQAFELILSPRSKESVPDFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLK
QLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHVEEVRKNKESK
DPADETEAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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