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Report for CCDS18021.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18021.2 Public Mus musculus 4 Gabrr1 23 108 98 CCDS HistoryNCBI Gene:14408Re-query CCDS DB by CCDS ID:18021.2Re-query CCDS DB by GeneID:14408See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18021.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18021.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029947.5 ENSMUSP00000029947.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029947.5Link to Ensembl Protein Viewer:ENSMUSP00000029947.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029947Re-query CCDS DB by Protein ID:ENSMUSP00000029947
Original member Current member NCBI NM_008075.2 NP_032101.3 Accepted alive Link to Nucleotide Sequence:NM_008075.2Link to Protein Sequence:NP_032101.3Re-query CCDS DB by Nucleotide ID:NM_008075Re-query CCDS DB by Protein ID:NP_032101Link to BLAST:NP_032101.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032101.3 480 P56475 480 100% 0 0

Chromosomal Locations for CCDS 18021.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 33132654 33132775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33146937 33146990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33148921 33149027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33151369 33151436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33152413 33152636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33157060 33157142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33158037 33158177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33160117 33160269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33161630 33161826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33162585 33162878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTTGGCTGTCCAGAATATGAAATTTGGCATATTCCTTTTGTGGTGGGGATGGGTTCTGGCTGCTGAGA
GCACAGCGCACTGGCCAGGAAGAGAAGTTCATGAGCCATCTAGGAAAGGCAGCAGACCTCAGAGACAGAG
ACGAGGAGCACACGACGATGCCCACAAGCAAGGCAGCCCAATCCTGAGACGAAGCTCTGACATAACCAAG
TCTCCTCTCACCAAGTCTGAGCAGCTGCTGAGGATAGACGACCATGATTTCAGCATGAGGCCTGGTTTTG
GAGGCCCAGCCATTCCTGTGGGCGTGGATGTGCAGGTGGAGAGCCTGGACAGCATCTCAGAGGTTGACAT
GGACTTCACCATGACGCTATATTTGAGGCACTACTGGAAGGACGAGAGACTGTCTTTCCCCAGCTCCAAC
AACCTCAGCATGACCTTTGATGGCCGACTTGTAAAGAAGATCTGGGTTCCCGACATGTTCTTTGTGCACT
CCAAACGCTCCTTCATCCACGACACCACCACAGACAACGTCATGCTGCGCGTCCAGCCAGACGGCAAAGT
GCTCTACAGCCTCAGAGTTACAGTGACCGCGATGTGCAACATGGACTTCAGCAGGTTTCCCCTGGACACA
CAGACCTGCTCTCTGGAAATCGAAAGCTACGCTTATACGGAAGACGACCTAATGCTGTACTGGAAAAAAG
GCAATGACTCCTTAAAGACAGATGAGAGGATCTCCCTCTCTCAGTTCCTCATTCAAGAATTCCACACCAC
CACAAAACTAGCCTTCTACAGCAGTACAGGCTGGTACAACCGTCTGTACATCAACTTCACTCTGCGTCGT
CACATCTTCTTCTTCTTGCTCCAAACCTACTTTCCTGCCACCCTCATGGTCATGCTGTCCTGGGTGTCTT
TCTGGATCGACCGCAGAGCTGTGCCTGCTAGAGTCCCCTTAGGCATCACCACGGTGCTGACCATGTCCAC
CATCATCACGGGCGTGAATGCCTCCATGCCCCGAGTGTCCTACATCAAAGCTGTGGACATCTACCTCTGG
GTCAGCTTTGTGTTCGTCTTCCTCTCCGTGCTGGAGTACGCAGCTGTCAACTACCTGACCACAGTGCAGG
AGCGGAAGGAACGGAAGCTTCGGGAGAAGATCTCCTGCACCTGTGGGCTGCCCCAGCCTCGAGGGGTGAT
GCTGGACAGCAGCTACAGTGATGGAGAGGTGAACGACCTGGGCGGCTACATGCCTGAGAACGGAGAGAAA
CCCGACCGGATGATGGTGCAGCTGACTCTGGCCTCTGAGAGGGGCTCTCCACAGAGGAAGGGCCAGAGAG
GCAGCTATGTGAGCATGAGGATCAACACTCACGCCATTGATAAATACTCAAGGATCATTTTCCCAGCCGC
TTACATTTTATTCAATCTGATATACTGGTCAATTTTCTCTTAG

Translation (480 aa):
MLAVQNMKFGIFLLWWGWVLAAESTAHWPGREVHEPSRKGSRPQRQRRGAHDDAHKQGSPILRRSSDITK
SPLTKSEQLLRIDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSSN
NLSMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDT
QTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRR
HIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLW
VSFVFVFLSVLEYAAVNYLTTVQERKERKLREKISCTCGLPQPRGVMLDSSYSDGEVNDLGGYMPENGEK
PDRMMVQLTLASERGSPQRKGQRGSYVSMRINTHAIDKYSRIIFPAAYILFNLIYWSIFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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