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Report for CCDS17822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17822.1 Public Mus musculus 3 Arsj 23 108 98 CCDS HistoryNCBI Gene:271970Re-query CCDS DB by CCDS ID:17822.1Re-query CCDS DB by GeneID:271970See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093976.3 ENSMUSP00000091511.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093976.3Link to Ensembl Protein Viewer:ENSMUSP00000091511.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093976Re-query CCDS DB by Protein ID:ENSMUSP00000091511
Original member NCBI NM_173451.3 NP_775627.1 Updated not alive Link to Nucleotide Sequence:NM_173451.3Link to Protein Sequence:NP_775627.1Re-query CCDS DB by Nucleotide ID:NM_173451Re-query CCDS DB by Protein ID:NP_775627
Current member NCBI NM_173451.4 NP_775627.1 Accepted alive Link to Nucleotide Sequence:NM_173451.4Link to Protein Sequence:NP_775627.1Re-query CCDS DB by Nucleotide ID:NM_173451Re-query CCDS DB by Protein ID:NP_775627Link to BLAST:NP_775627.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775627.1 598 Q8BM89 598 100% 0 0

Chromosomal Locations for CCDS 17822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126364774 126365165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126437999 126439403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGCCCCCAGGGACAGTGCGGAGCCTCTGCCTCCGCTATCTCCACAGGCCTGGGCCTGGTCTGGAAAGT
TCTTAGCGATGGGTGCCCTGGCAGGCTTCTCGGTCCTCAGCCTGCTCACCTATGGCTACCTGTGCTGGGG
CCAGGACTTAGAAGAGGAGGGGTCCCTAAAAGCTCAAGTTGATGAGAGACCTGAAGCAGGCACAGCAGGC
ACCTCCCAGCCCCATCTCATTTTTATCTTAGCTGATGATCAGGGATTTAGAGATGTGGGTTACCACGGAT
CTGAGATAAAGACGCCCACCCTTGATAAACTCGCTGCAGAAGGAGTTAAGCTAGAGAACTACTATGTCCA
GCCTATTTGCACACCGTCCAGGAGCCAGTTTATTACCGGAAAGTATCAGATACACACGGGACTTCAGCAT
TCTATCATTAGACCTACCCAACCCAACTGTCTACCTCTGGACAATGCAACCCTACCTCAGAAGCTAAAGG
AGGTCGGCTATTCAACCCATATGGTTGGGAAGTGGCACTTGGGATTTTACAGAAAAGACTGCATGCCCAC
CAAGAGAGGATTTGATACCTTTTTTGGCTCTCTTTTGGGAAGTGGTGATTATTATACACACTACAAATGT
GACAGTCCTGGGGTGTGTGGCTATGACTTGTACGAAAACGACAATGCAGCTTGGGACTATGACAATGGCA
TCTATTCAACACAGATGTACACGCAGAGAGTGCAGCAAATCTTAGCCACCCATGATCCCACAAAACCTCT
ATTTTTATATGTGGCTTACCAAGCTGTCCACTCACCACTTCAAGCCCCTGGCAGGTACTTTGAACACTAC
AGATCCATTATCAACATAAACAGGAGGAGGTACGCAGCCATGCTCTCCTGCTTGGATGAAGCAATCCACA
ATGTGACCCTGGCCCTAAAGAGGTATGGTTTCTATAACAATAGCATTATCATTTACTCCTCAGATAATGG
TGGGCAGCCCACAGCAGGAGGAAGTAACTGGCCACTCAGAGGCAGCAAAGGAACATATTGGGAAGGAGGC
ATCCGGGCAGTTGGCTTTGTGCATAGCCCACTTCTAAAAAACAAGGGAACGGTATGTAAGGAACTTGTGC
ACATCACCGATTGGTACCCAACCTTGATTTCACTGGCTGAAGGACAGATTGATGAAGACATTCAGCTAGA
TGGATACGATATCTGGGAGACCATAAGCGAAGGTCTTCGTTCACCCCGAGTGGATATTTTGCACAACATT
GACCCCATTTACACCAAGGCGAAAAATGGCTCCTGGGCAGCAGGCTATGGGATCTGGAACACTGCAATCC
AGTCGGCCATCCGGGTACAACACTGGAAACTGCTCACAGGCAATCCTGGCTACAGTGACTGGGTCCCCCC
TCAGGCTTTCAGCAATCTGGGCCCAAACCGGTGGCACAATGAAAGGATTACCTTGTCAACTGGCAAGAGT
ATCTGGCTTTTCAACATCACGGCTGATCCGTATGAGAGGGTGGACCTATCCAGCAGGTATCCAGGCATCG
TGAAGAAGCTGCTGCGGAGACTGTCACAATTCAACAAGACTGCCGTGCCTGTCAGGTACCCCCCGAAGGA
TCCCAGAAGCAACCCTAGGCTCAACGGAGGAGTCTGGGGTCCGTGGTATAAAGAGGAAAACAAGAAAAAG
AAGTCAAACAAAACCAAGGCTAAGAAAATGCAAAAGAAAAAAAGTAAGGCAAGGATGAGGAAGCAGTTGG
CAGCTCACTCCTCAATAAAATGCCACCCAAGTGTTGCCACTGGCTAA

Translation (598 aa):
MAPRDSAEPLPPLSPQAWAWSGKFLAMGALAGFSVLSLLTYGYLCWGQDLEEEGSLKAQVDERPEAGTAG
TSQPHLIFILADDQGFRDVGYHGSEIKTPTLDKLAAEGVKLENYYVQPICTPSRSQFITGKYQIHTGLQH
SIIRPTQPNCLPLDNATLPQKLKEVGYSTHMVGKWHLGFYRKDCMPTKRGFDTFFGSLLGSGDYYTHYKC
DSPGVCGYDLYENDNAAWDYDNGIYSTQMYTQRVQQILATHDPTKPLFLYVAYQAVHSPLQAPGRYFEHY
RSIININRRRYAAMLSCLDEAIHNVTLALKRYGFYNNSIIIYSSDNGGQPTAGGSNWPLRGSKGTYWEGG
IRAVGFVHSPLLKNKGTVCKELVHITDWYPTLISLAEGQIDEDIQLDGYDIWETISEGLRSPRVDILHNI
DPIYTKAKNGSWAAGYGIWNTAIQSAIRVQHWKLLTGNPGYSDWVPPQAFSNLGPNRWHNERITLSTGKS
IWLFNITADPYERVDLSSRYPGIVKKLLRRLSQFNKTAVPVRYPPKDPRSNPRLNGGVWGPWYKEENKKK
KSNKTKAKKMQKKKSKARMRKQLAAHSSIKCHPSVATG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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