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Report for CCDS17788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17788.1 Public Mus musculus 3 Lrrc39 23 108 98 CCDS HistoryNCBI Gene:109245Re-query CCDS DB by CCDS ID:17788.1Re-query CCDS DB by GeneID:109245See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029573.7 ENSMUSP00000029573.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029573.7Link to Ensembl Protein Viewer:ENSMUSP00000029573.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029573Re-query CCDS DB by Protein ID:ENSMUSP00000029573
Original member NCBI NM_175413.3 NP_780622.1 Updated not alive Link to Nucleotide Sequence:NM_175413.3Link to Protein Sequence:NP_780622.1Re-query CCDS DB by Nucleotide ID:NM_175413Re-query CCDS DB by Protein ID:NP_780622
Current member NCBI NM_175413.4 NP_780622.1 Accepted alive Link to Nucleotide Sequence:NM_175413.4Link to Protein Sequence:NP_780622.1Re-query CCDS DB by Nucleotide ID:NM_175413Re-query CCDS DB by Protein ID:NP_780622Link to BLAST:NP_780622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780622.1 337 Q8BGI7 337 100% 0 0

Chromosomal Locations for CCDS 17788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116565808 116565920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116568759 116568864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116569999 116570155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116570838 116570974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116577419 116577564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116578245 116578397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116579505 116579641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116581221 116581285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGACAGAAAGTGCGGTTTGTACCGGGGCCGTCAGTGCTGTAAAGGAAGTCTGGGAAGAAAGAATAAAGA
AACACCATGAAGACGTGAAGCGGGAGAAGGAATTTCAGCATAAGCTAGTGCGGATCTGGGAAGACCGAGT
AAGTTTAACTAAGCTGAAAGAGAAGGTGACCAGGGAAGATGGAAGAGTCATTTTAAGGATAGAGAAAGAA
GAATGGAAGACTCTCCCTTCTTCTTTACTGAAACTGAATCAGCTACAGGAATGGCAACTTCACAGGACCG
GATTGTTGAAGATTCCTGAATTCATTGGAAGATTCCAGCATCTCATTGTGCTAGATTTATCTCGGAACAC
AATTTCAGAGATCCCCCGAGGGATTGGACTGCTCACTAGACTTCAGGAACTGATTCTTAGCTACAACAAA
ATCAAGACTGTCCCCAAAGAACTGAGCAACTGTACCAGCTTGGAGAAGCTAGAACTGGCTGTGAACAGAG
ATATAAGTGACCTCCCACCAGAGCTCAGCAAACTGTTAAAACTCACTCACCTTGACCTGAGTATGAATCA
GTTCACTACGATCCCTCATGCTGTGTTGGACATGCCTGCCCTCGAGTGGCTGGATATGGGAAGCAACAGC
CTGCAACAGCTTCCTGACTCACTAGACAGAATGCGAAGTTTACATACACTGTGGCTGCAGAGGAATGAAA
TAACATGCCTGCCAGAGACAATCAAAAATATGAAAAACTTGGGTACTCTTGTTCTCAGCAACAACAAACT
ACAAGATATCCCAGGCTGCATGGAAGAAATGACGAATCTGAGGTTTGTCAACTTCCGAGACAACCCACTA
AGACTGGAGGTGACGCTTCCTCCCAGCGACAACACAGATGGAGAGGAAGAACAGGAGTTATTTGGGCTGC
AGTTTATGCACGCATACATACAAGAGTCCCGGAGAACAGAAGACCAAGTCAACTGTCTGACTCAAATGCC
AAGCTCTATACATTCTGATGGAGAAAGTAATTGA

Translation (337 aa):
MTESAVCTGAVSAVKEVWEERIKKHHEDVKREKEFQHKLVRIWEDRVSLTKLKEKVTREDGRVILRIEKE
EWKTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLDLSRNTISEIPRGIGLLTRLQELILSYNK
IKTVPKELSNCTSLEKLELAVNRDISDLPPELSKLLKLTHLDLSMNQFTTIPHAVLDMPALEWLDMGSNS
LQQLPDSLDRMRSLHTLWLQRNEITCLPETIKNMKNLGTLVLSNNKLQDIPGCMEEMTNLRFVNFRDNPL
RLEVTLPPSDNTDGEEEQELFGLQFMHAYIQESRRTEDQVNCLTQMPSSIHSDGESN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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