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Report for CCDS17614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17614.1 Public Mus musculus 3 Arnt 23 108 98 CCDS HistoryNCBI Gene:11863Re-query CCDS DB by CCDS ID:17614.1Re-query CCDS DB by GeneID:11863See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102749.10 ENSMUSP00000099810.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102749.10Link to Ensembl Protein Viewer:ENSMUSP00000099810.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102749Re-query CCDS DB by Protein ID:ENSMUSP00000099810
Original member Current member NCBI NM_001037737.2 NP_001032826.1 Accepted alive Link to Nucleotide Sequence:NM_001037737.2Link to Protein Sequence:NP_001032826.1Re-query CCDS DB by Nucleotide ID:NM_001037737Re-query CCDS DB by Protein ID:NP_001032826Link to BLAST:NP_001032826.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032826.1 791 P53762-1 791 100% 0 0

Chromosomal Locations for CCDS 17614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95434537 95434561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95448372 95448483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95452585 95452629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95460377 95460421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95466793 95466837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95470177 95470390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95474539 95474752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95476080 95476182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95480195 95480260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95480754 95480839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95483772 95483848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95484859 95484993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95487249 95487323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95488355 95488506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95489592 95489702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95489881 95489956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95490255 95490378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95490553 95490655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95491023 95491170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95493698 95493860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95494447 95494613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95495304 95495393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGGCGGCGACTACAGCTAACCCAGAAATGACATCAGATGTACCATCGCTGGGTCCCACCATTGCTTCTG
GAAACCCTGGACCTGGGATTCAAGGTGGAGGAGCTGTTGTACAGAGGGCTATTAAGCGACGGTCAGGGCT
GGATTTTGATGATGAAGTAGAAGTGAACACTAAATTTTTGAGATGCGATGATGACCAGATGTGTAATGAC
AAAGAGCGGTTTGCCAGGTCGGATGATGAGCAGAGCTCTGCGGATAAAGAGAGACTTGCCAGGGAAAATC
ATAGTGAAATAGAACGGCGGCGACGGAACAAGATGACAGCTTACATCACAGAACTGTCAGACATGGTACC
TACATGTAGTGCCCTGGCTCGAAAACCAGACAAGCTAACCATCTTACGCATGGCCGTTTCTCACATGAAG
TCCTTGAGGGGAACTGGCAACACATCTACTGATGGCTCCTACAAGCCATCTTTCCTCACTGATCAGGAAC
TGAAACATTTGATCTTGGAGGCAGCAGATGGCTTTCTGTTTATTGTCTCCTGTGAGACTGGACGGGTGGT
GTATGTCTCTGACTCAGTGACTCCCGTTTTGAACCAGCCACAGTCTGAATGGTTCGGGAGCACACTGTAT
GATCAGGTGCACCCAGATGATGTGGATAAACTTCGAGAGCAGCTCTCTACATCAGAAAATGCCCTAACAG
GGCGGGTCCTGGATCTGAAGACTGGAACAGTGAAAAAGGAAGGCCAGCAGTCTTCCATGAGGATGTGCAT
GGGCTCACGAAGGTCGTTCATCTGCCGCATGAGGTGTGGTACTAGCTCCGTGGACCCTGTTTCCATGAAT
AGACTGAGCTTTTTGAGGAACAGATGCAGGAATGGGCTTGGCTCTGTGAAGGAAGGAGAACCTCACTTTG
TGGTAGTCCACTGCACAGGCTACATCAAGGCCTGGCCACCAGCAGGTGTCTCCCTCCCAGATGATGACCC
AGAGGCTGGCCAGGGGAGCAAATTCTGCCTAGTGGCCATTGGCAGGCTGCAGGTAACTAGTTCTCCCAAC
TGTACAGACATGAGTAACATTTGTCAGCCAACAGAGTTCATCTCCCGACACAACATTGAAGGGATATTCA
CTTTTGTAGACCATCGTTGTGTGGCTACTGTTGGCTACCAGCCACAGGAGCTCTTAGGGAAGAATATTGT
AGAATTTTGTCATCCTGAAGACCAACAACTTCTAAGAGACAGCTTTCAGCAGGTGGTGAAATTAAAAGGT
CAGGTGCTGTCCGTCATGTTCCGATTCCGATCTAAGACCCGAGAATGGCTGTGGATGAGAACGAGCTCCT
TTACCTTCCAAAACCCTTATTCAGATGAAATTGAGTATATTATCTGCACCAACACCAATGTGAAGAACTC
TAGCCAGGAACCACGGCCTACACTGTCCAACACCATCCCAAGGTCACAGCTAGGTCCGACAGCCAATTTA
TCCCTAGAGATGGGTACAGGGCAGCTGCCATCCAGGCAGCAGCAGCAGCAGCACACAGAACTGGATATGG
TACCAGGAAGAGATGGGCTGGCCAGCTATAATCATTCCCAGGTTTCTGTCCAGCCTGTGGCAAGTGCAGG
ATCAGAACACAGCAAGCCCCTTGAGAAGTCAGAAGGTCTCTTTGCACAGGACAGAGATCCAAGGTTTCCA
GAAATCTATCCCAGCATCACTGCAGATCAGAGTAAAGGCATCTCCTCCAGCACTGTCCCTGCCACCCAAC
AGCTGTTCTCCCAGGGCAGCTCATTCCCTCCTAACCCCCGGCCGGCAGAGAATTTCAGGAATAGTGGTCT
TACCCCTCCTGTAACCATTGTCCAGCCATCATCTTCTGCAGGGCAGATACTGGCCCAGATTTCACGTCAC
TCCAACCCTGCCCAGGGATCAGCGCCGACCTGGACCTCTAGCTCCCGCCCAGGCTTTGCCGCCCAGCAGG
TGCCCACCCAGGCTACAGCCAAGACTCGTTCTTCCCAATTTGGTGTGAACAACTTTCAGACTTCTTCCTC
CTTCAGTGCTATGTCTCTTCCGGGTGCTCCCACTGCCTCATCTGGTACTGCTGCCTACCCTGCTCTCCCC
AACCGTGGCTCCAACTTTCCTCCTGAGACTGGACAGACCACAGGACAGTTCCAGGCCCGGACAGCAGAGG
GCGTGGGTGTCTGGCCACAGTGGCAGGGCCAGCAGCCCCATCATCGGTCTAGTTCCAGTGAGCAGCATGT
TCAGCAGACACAAGCACAAGCACCTAGCCAGCCTGAGGTCTTTCAAGAAATGCTGTCCATGCTGGGAGAC
CAAAGCAACACCTACAACAATGAAGAATTTCCTGATCTAACTATGTTTCCCCCCTTTTCCGAATAG

Translation (791 aa):
MAATTANPEMTSDVPSLGPTIASGNPGPGIQGGGAVVQRAIKRRSGLDFDDEVEVNTKFLRCDDDQMCND
KERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMK
SLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLY
DQVHPDDVDKLREQLSTSENALTGRVLDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGTSSVDPVSMN
RLSFLRNRCRNGLGSVKEGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPN
CTDMSNICQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKG
QVLSVMFRFRSKTREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIPRSQLGPTANL
SLEMGTGQLPSRQQQQQHTELDMVPGRDGLASYNHSQVSVQPVASAGSEHSKPLEKSEGLFAQDRDPRFP
EIYPSITADQSKGISSSTVPATQQLFSQGSSFPPNPRPAENFRNSGLTPPVTIVQPSSSAGQILAQISRH
SNPAQGSAPTWTSSSRPGFAAQQVPTQATAKTRSSQFGVNNFQTSSSFSAMSLPGAPTASSGTAAYPALP
NRGSNFPPETGQTTGQFQARTAEGVGVWPQWQGQQPHHRSSSSEQHVQQTQAQAPSQPEVFQEMLSMLGD
QSNTYNNEEFPDLTMFPPFSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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