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Report for CCDS17462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17462.1 Public Mus musculus 3 Bcan 23 108 98 CCDS HistoryNCBI Gene:12032Re-query CCDS DB by CCDS ID:17462.1Re-query CCDS DB by GeneID:12032See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090971.10 ENSMUSP00000088491.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090971.10Link to Ensembl Protein Viewer:ENSMUSP00000088491.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090971Re-query CCDS DB by Protein ID:ENSMUSP00000088491
Original member NCBI NM_007529.2 NP_031555.2 Updated not alive Link to Nucleotide Sequence:NM_007529.2Link to Protein Sequence:NP_031555.2Re-query CCDS DB by Nucleotide ID:NM_007529Re-query CCDS DB by Protein ID:NP_031555
Current member NCBI NM_007529.3 NP_031555.2 Accepted alive Link to Nucleotide Sequence:NM_007529.3Link to Protein Sequence:NP_031555.2Re-query CCDS DB by Nucleotide ID:NM_007529Re-query CCDS DB by Protein ID:NP_031555Link to BLAST:NP_031555.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031555.2 883 Q61361 883 100% 0 0

Chromosomal Locations for CCDS 17462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87987872 87987967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87988272 87988462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87988693 87988837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87989168 87989250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87990140 87990298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87990675 87990782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87993055 87993642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87994112 87994333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87995410 87995703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87996118 87996245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87996539 87996713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87996985 87997356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87997745 87997835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2652 nt):
ATGATTCCACTGCTTCTGTCCCTGCTGGCCGCTCTGGTCCTGACCCAAGCCCCTGCCGCCCTCGCTGATG
ACCTGAAAGAAGACAGCTCGGAGGATCGAGCCTTCCGCGTGCGCATCGGTGCCACGCAGCTGCGGGGCGT
GCTGGGCGGTGCCCTGGCCATCCCATGCCACGTCCACCACCTGCGGCCGCCGCACAGTCGCCGGGCCGCG
CCGGGTTTTCCCCGGGTCAAGTGGACCTTCCTGTCCGGGGACCGGGAGGTAGAGGTACTGGTGGCTCGTG
GGCTGCGCGTCAAGGTAAACGAAGCCTACCGGTTCCGCGTGGCGCTGCCTGCCTACCCCGCATCGCTCAC
GGATGTGTCTCTAGTATTGAGCGAACTGCGGCCCAATGATTCCGGGGTCTATCGCTGCGAGGTCCAGCAC
GGTATCGACGACAGCAGTGATGCTGTGGAGGTCAAGGTCAAAGGGGTCGTCTTCCTCTACAGAGAGGGCT
CTGCGCGCTATGCTTTCTCCTTTGCTGGAGCCCAGGAAGCCTGCGCTCGCATAGGAGCCCGAATCGCCAC
CCCGGAGCAGCTCTATGCTGCCTACCTCGGCGGCTATGAGCAGTGTGATGCAGGCTGGCTGTCCGACCAA
ACTGTGAGGTACCCCATCCAGAACCCACGAGAGGCCTGCTCTGGAGACATGGATGGCTATCCTGGCGTGC
GGAACTACGGAGTGGTGGGTCCTGATGATCTCTATGATGTCTACTGTTATGCCGAAGACCTAAATGGAGA
ACTGTTCCTAGGCGCCCCTCCCAGCAAGCTGACATGGGAGGAGGCTCGGGACTACTGTCTGGAACGTGGT
GCACAGATCGCTAGCACAGGCCAGCTGTACGCAGCCTGGAATGGTGGCCTGGACAGATGTAGCCCTGGCT
GGCTGGCTGATGGCAGCGTGCGCTATCCCATCATCACACCCAGCCAACGCTGTGGGGGCGGCCTGCCAGG
AGTCAAGACCCTCTTCCTCTTTCCCAACCAGACTGGCTTCCCCAGCAAGCAGAACCGCTTCAATGTCTAC
TGCTTCCGAGACTCTGCCCATCCCTCTGCTTCCTCTGAGGCCTCTAGCCCAGCCTCAGATGGACTTGAGG
CCATTGTCACAGTGACAGAAAAGCTGGAGGAACTGCAGCTGCCTCAGGAAGCGATGGAGAGCGAGTCTCG
TGGGGCCATCTACTCCATCCCCATCTCAGAAGATGGGGGAGGAGGAAGCTCCACCCCAGAAGACCCAGCA
GAGGCCCCCAGGACTCCGCTAGAATCGGAAACCCAATCCATTGCACCACCTACCGAGTCCTCAGAAGAGG
AAGGCGTAGCCCTGGAGGAAGAAGAAAGATTCAAAGACTTGGAGGCTCTGGAGGAAGAGAAGGAGCAGGA
GGACCTGTGGGTGTGGCCCAGAGAGCTCAGCAGCCCTCTCCCTACTGGCTCAGAAACAGAGCATTCACTC
TCCCAGGTGTCCCCACCAGCCCAGGCAGTTCTACAGCTGGGTGCCTCACCTTCTCCTGGGCCTCCAAGGG
TCCGTGGACCGCCTGCAGAGACTTTGCTCCCCCCGAGGGAGGGAAGCCCCACATCTACTCCTGGTGGGGC
AAGAGAAGTAGGGGGGGAAACTGGGAGCCCTGAGCTCTCTGGGGTTCCTCGAGAGAGCGAGGAGGCAGGG
AGCTCCAGCTTGGAGGATGGCCCTTCCCTACTTCCAGCTACATGGGCCCCTGTGGGTCCCAGGGAGCTGG
AGACCCCCTCAGAAGAGAAGTCTGGAAGAACTGTCCTGGCAGGCACCTCAGTGCAGGCCCAGCCAGTGCT
GCCCACCGACAGTGCCAGCCACGGTGGAGTGGCTGTGGCTCCCTCATCAGGTGACTGTATCCCCAGCCCC
TGCCACAATGGTGGGACATGCTTGGAGGAGAAGGAGGGTTTCCGCTGCCTATGTTTGCCAGGCTATGGGG
GGGACCTGTGCGATGTTGGCCTTCATTTCTGCAGCCCTGGCTGGGAGGCCTTCCAGGGAGCCTGCTACAA
GCACTTTTCCACACGAAGGAGTTGGGAGGAGGCAGAAAGTCAGTGCCGAGCGCTAGGTGCTCATCTGACC
AGCATCTGCACCCCTGAGGAGCAAGACTTTGTCAACGATCGATACCGGGAGTACCAGTGGATTGGGCTCA
ATGACAGGACCATCGAGGGTGACTTCTTGTGGTCAGATGGTGCCCCTCTGCTCTATGAAAACTGGAACCC
TGGGCAGCCTGACAGCTACTTCCTGTCTGGGGAGAACTGTGTGGTCATGGTGTGGCATGACCAGGGACAG
TGGAGTGATGTGCCCTGCAACTACCATCTATCCTACACCTGCAAGATGGGGCTTGTGTCCTGTGGGCCTC
CACCACAGCTACCCCTGGCTCAAATATTTGGTCGCCCTCGGCTGCGCTACGCGGTGGATACTGTGCTTCG
ATATCGATGCCGAGACGGGCTGGCTCAGCGCAACCTGCCGTTGATCCGCTGCCAGGAGAATGGGCTTTGG
GAGGCCCCTCAGATTTCCTGTGTACCCCGGAGGCCTGGCCGTGCTCTGCGCTCCATGGACGCCCCAGAAG
GACCACGGGGACAGCTCTCGAGGCACAGGAAGGCACCGTTGACACCGCCCTCCAGTCTCTAG

Translation (883 aa):
MIPLLLSLLAALVLTQAPAALADDLKEDSSEDRAFRVRIGATQLRGVLGGALAIPCHVHHLRPPHSRRAA
PGFPRVKWTFLSGDREVEVLVARGLRVKVNEAYRFRVALPAYPASLTDVSLVLSELRPNDSGVYRCEVQH
GIDDSSDAVEVKVKGVVFLYREGSARYAFSFAGAQEACARIGARIATPEQLYAAYLGGYEQCDAGWLSDQ
TVRYPIQNPREACSGDMDGYPGVRNYGVVGPDDLYDVYCYAEDLNGELFLGAPPSKLTWEEARDYCLERG
AQIASTGQLYAAWNGGLDRCSPGWLADGSVRYPIITPSQRCGGGLPGVKTLFLFPNQTGFPSKQNRFNVY
CFRDSAHPSASSEASSPASDGLEAIVTVTEKLEELQLPQEAMESESRGAIYSIPISEDGGGGSSTPEDPA
EAPRTPLESETQSIAPPTESSEEEGVALEEEERFKDLEALEEEKEQEDLWVWPRELSSPLPTGSETEHSL
SQVSPPAQAVLQLGASPSPGPPRVRGPPAETLLPPREGSPTSTPGGAREVGGETGSPELSGVPRESEEAG
SSSLEDGPSLLPATWAPVGPRELETPSEEKSGRTVLAGTSVQAQPVLPTDSASHGGVAVAPSSGDCIPSP
CHNGGTCLEEKEGFRCLCLPGYGGDLCDVGLHFCSPGWEAFQGACYKHFSTRRSWEEAESQCRALGAHLT
SICTPEEQDFVNDRYREYQWIGLNDRTIEGDFLWSDGAPLLYENWNPGQPDSYFLSGENCVVMVWHDQGQ
WSDVPCNYHLSYTCKMGLVSCGPPPQLPLAQIFGRPRLRYAVDTVLRYRCRDGLAQRNLPLIRCQENGLW
EAPQISCVPRRPGRALRSMDAPEGPRGQLSRHRKAPLTPPSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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