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Report for CCDS17275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17275.1 Public Mus musculus 3 Pld1 23 108 98 CCDS HistoryNCBI Gene:18805Re-query CCDS DB by CCDS ID:17275.1Re-query CCDS DB by GeneID:18805See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067757.10 ENSMUSP00000064694.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067757.10Link to Ensembl Protein Viewer:ENSMUSP00000064694.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067757Re-query CCDS DB by Protein ID:ENSMUSP00000064694
Original member Current member EBI ENSMUST00000120834.7 ENSMUSP00000113810.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120834.7Link to Ensembl Protein Viewer:ENSMUSP00000113810.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120834Re-query CCDS DB by Protein ID:ENSMUSP00000113810
Original member NCBI NM_001164056.1 NP_001157528.1 Updated not alive Link to Nucleotide Sequence:NM_001164056.1Link to Protein Sequence:NP_001157528.1Re-query CCDS DB by Nucleotide ID:NM_001164056Re-query CCDS DB by Protein ID:NP_001157528
Current member NCBI NM_001164056.2 NP_001157528.1 Accepted alive Link to Nucleotide Sequence:NM_001164056.2Link to Protein Sequence:NP_001157528.1Re-query CCDS DB by Nucleotide ID:NM_001164056Re-query CCDS DB by Protein ID:NP_001157528Link to BLAST:NP_001157528.1
Original member NCBI NM_008875.4 NP_032901.2 Updated not alive Link to Nucleotide Sequence:NM_008875.4Link to Protein Sequence:NP_032901.2Re-query CCDS DB by Nucleotide ID:NM_008875Re-query CCDS DB by Protein ID:NP_032901
Current member NCBI NM_008875.5 NP_032901.2 Accepted alive Link to Nucleotide Sequence:NM_008875.5Link to Protein Sequence:NP_032901.2Re-query CCDS DB by Nucleotide ID:NM_008875Re-query CCDS DB by Protein ID:NP_032901Link to BLAST:NP_032901.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157528.1 1036 Q9Z280-2 1036 99.807% 0 2
NP_032901.2 1036 Q9Z280-2 1036 99.807% 0 2

Chromosomal Locations for CCDS 17275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 28024194 28024353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28025213 28025340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28028596 28028741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28029167 28029272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28031237 28031302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28039776 28039834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28041185 28041277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28044944 28045096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28048013 28048162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28049209 28049292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28056463 28056544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28071166 28071276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28076391 28076591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28078204 28078417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28085786 28085914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28087172 28087290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28088646 28088759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28095771 28095881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28099660 28099748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28109735 28109848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28112243 28112292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28120694 28120828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28124573 28124726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28130313 28130430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28131514 28131738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3111 nt):
ATGTCACTGAAAAGCGAGACCAGGGTGAACACGTCTACACTGCAGAAAATCGCCGCAGATATGAGCAACC
TGATAGAAAATCTCGACACCCGGGAGCTTCATTTTGAGGGAGAGGAGGTGGAATATGACGCATCTCCAGG
AGACCCCAAGGCCCAGGAAGGGTGCATCCCATTCTCTTCTATTTACAACACTCAAGGATTTAAGGAGCCC
AACATCCAGACCTACCTCTCTGGCTGTCCCATAAAAGCACAAGTACTGGAAGTGGAGCGCTTCACATCGA
CCTCAAGGGTGCCAAGTATCAACCTGTACACGATCGAGTTAACGCACGGGGAATTCACATGGCAAGTTAA
GAGGAAATTCAAGCACTTCCAAGAGTTTCACAGAGAGCTGCTCAAGTACAAAGCCTTCATCCGGATCCCC
ATCCCCACTAAAAGACATACATTTAGAAGACAAAATGTCAAAGAAGAACCCCGAGAGATGCCCAGTCTGC
CCCGTTCATCAGAAAACGCAATCCAGGAAGAGCAGTTCTTTGGCAGGAGGAAGCAACTGGAAGATTACTT
GACAAAAATACTAAAAATGCCCATGTACAGAAACTATCATGCCACGACAGAGTTCCTTGATGTAAGCCAG
CTGTCCTTCATCCATGATCTGGGACCAAAGGGCCTGGAAGGAATGATCATGAAAAGGTCTGGGGGACACA
GGATACCAGGTGTGAATTGCTGTGGCCATGGACGAGCCTGCTACCGGTGGTCAAAGAGGTGGTTGATAGT
AAAAGACTCTTTCCTGCTCTATATGAAACCAGATAGCGGGGCTATTGCCTTCGTCCTCCTTGTAGATAAA
GAATTCAGAGTCAAAGTGGGAAGGAAAGAGACAGAAACGAAATATGGACTTCGGATCGATAATCTTTCAA
GGACCCTGATTTTAAAATGTAACAGCTACAGACACGCCCGGTGGTGGGGAGGCGCCATCGAGGAGTTCAT
CCGGAAGCATGGAGCTGACTTCCTCAAAGACCATCGCTTCGGGTCCTACGCCGCTCTCCATGAGAACACG
TTAGCTAAGTGGTATGTGAACGCCAAAGGTTACTTTGAAGACATCGCAAATGCAATGGAAGAGGCATCGG
AAGAGATTTTTATCACAGATTGGTGGTTAAGTCCAGAAATCTTCCTGAAGCGCCCAGTGGTGGAAGGCAA
CCGCTGGAGGCTGGACTGCATCCTCAAACGGAAAGCACAACAAGGTGTGCGGATCTTCATAATGCTTTAC
AAAGAGGTGGAGCTAGCCCTCGGGATCAACAGCGAGTACAGCAAGCGGACGTTGATGAGGCTGCACCCCA
ACATAAAGGTGATGAGACACCCAGACCACGTGTCCTCCAGCGTGTACCTGTGGGCTCACCATGAGAAGCT
TGTCATTATCGACCAATCAGTGGCTTTCGTGGGTGGGATTGACCTGGCCTACGGAAGGTGGGATGACAAT
GAGCACAGACTCACAGACGTGGGCAGTGTCAAGCGGGTCACCTCAGGACTGTCTCTGGGCTCCCTCACGG
CAGCATCAGTAGAGTCTATGGAATCCTTAAGCCTCAAGGATAAACATGAATTTCATAAAAAGGAGCCCAT
CTCAAAGATTGTTGATGAGACTGACATGAAGCTGAAAGGGATAGGAAAGTCCAGGAAATTCTCCAAATTT
AGTCTCTATCGCCAGCTGCACCGTCACCACCTGCACAACGCGGACAGCATCAGCAGCATCGACAGCACCT
CCAACACTGGCTCCATCCGCAGCGTGCAGACCGGAGTGGGAGAACTCCACGGGGAGACTAGGTTTTGGCA
TGGGAAGGATTACTGCAACTTTGTCTTCAAGGACTGGGTTCAACTGGACAAACCTTTTGCTGATTTCATT
GACAGGTACTCAACCCCCCGGATGCCTTGGCATGATATTGGCTCTGTGGTCCATGGAAAGGCAGCTCGGG
ATGTGGCTCGACACTTCATCCAGCGCTGGAACTTCACGAAGATTATGAAGCCAAAATACCGCTCCCTTTC
TTATCCCTTCCTGCTACCAAAGTCTCAAGCGACAGCACACGAGTTGAGATATCAGGTGCCAGGGGCCGTC
CCCGCCAAAGTGCAGTTGCTCCGATCTGCTGCTGATTGGTCTGCTGGTATAAAGCACCATGAGGAATCCA
TCCACGCTGCCTACATCCATGTAATAGAGAACAGCAAGCACTACATCTATATTGAAAACCAATTTTTCAT
AAGCTGTGCTGATGATAAAGTTGTGTTCAACAAGGTGGGAGATGCTATCGCCCAGAGAATCCTGAAAGCC
CACAGGGAAGGCCAGAGATATCGGGTGTACATTGTGATACCGCTGCTGCCGGGATTCGAGGGAGACATTT
CCACAGGCGGGGGGAACGCTCTACAGGCAATAATGCACTTCAACTACAGAACCATGTGCAGAGGGGAGAG
CTCCATCCTTGAACAGTTAAAGCCAGAGCTTGGTAATAAGTGGATAAATTACATATCGTTTTGTGGACTG
AGAACACATGCAGAGCTGGAAGGAAACCTAGTCACCGAGCTCATCTACGTCCACAGCAAGTTGTTAATTG
CTGACGACAACACAGTTATTATTGGTTCTGCCAACATCAATGACCGGAGCATGCTGGGGAAGCGAGACAG
CGAAATGGCTGTCATAGTGCAGGACACAGAGACGGTCCCATCGGTGATGGATGGAAAGGAATATCAGGCT
GGTCGCTTTGCCCGAGACCTTCGCCTGGAGTGCTTCAGACTTGTCCTGGGTTATCTTTCTGACCCAAGTG
AGGACCTTCAGGATCCTGTGAGTGACAAATTCTTCAAGGAGATTTGGGTTTCAACAGCAGCTCGAAACGC
TACCATATATGATAAGGTCTTCCGGTGCCTTCCCAATGATGAAGTACACAATTTAATCCAGCTGCGGGAC
TTTATAAACAAGCCCATATTAGCAAAAGAGGATCGCCTTCGCGCCGAGGAAGAACTGAGGAAGATCCGCG
GGTTCTTGGTGCAGTTCCCTCTCTATTTCTTATCAGAAGAGAACCTGCTGCCTTCTGTTGGAACCAAAGA
AGCCATTGTGCCTATGGAGGTTTGGACTTAA

Translation (1036 aa):
MSLKSETRVNTSTLQKIAADMSNLIENLDTRELHFEGEEVEYDASPGDPKAQEGCIPFSSIYNTQGFKEP
NIQTYLSGCPIKAQVLEVERFTSTSRVPSINLYTIELTHGEFTWQVKRKFKHFQEFHRELLKYKAFIRIP
IPTKRHTFRRQNVKEEPREMPSLPRSSENAIQEEQFFGRRKQLEDYLTKILKMPMYRNYHATTEFLDVSQ
LSFIHDLGPKGLEGMIMKRSGGHRIPGVNCCGHGRACYRWSKRWLIVKDSFLLYMKPDSGAIAFVLLVDK
EFRVKVGRKETETKYGLRIDNLSRTLILKCNSYRHARWWGGAIEEFIRKHGADFLKDHRFGSYAALHENT
LAKWYVNAKGYFEDIANAMEEASEEIFITDWWLSPEIFLKRPVVEGNRWRLDCILKRKAQQGVRIFIMLY
KEVELALGINSEYSKRTLMRLHPNIKVMRHPDHVSSSVYLWAHHEKLVIIDQSVAFVGGIDLAYGRWDDN
EHRLTDVGSVKRVTSGLSLGSLTAASVESMESLSLKDKHEFHKKEPISKIVDETDMKLKGIGKSRKFSKF
SLYRQLHRHHLHNADSISSIDSTSNTGSIRSVQTGVGELHGETRFWHGKDYCNFVFKDWVQLDKPFADFI
DRYSTPRMPWHDIGSVVHGKAARDVARHFIQRWNFTKIMKPKYRSLSYPFLLPKSQATAHELRYQVPGAV
PAKVQLLRSAADWSAGIKHHEESIHAAYIHVIENSKHYIYIENQFFISCADDKVVFNKVGDAIAQRILKA
HREGQRYRVYIVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGESSILEQLKPELGNKWINYISFCGL
RTHAELEGNLVTELIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAVIVQDTETVPSVMDGKEYQA
GRFARDLRLECFRLVLGYLSDPSEDLQDPVSDKFFKEIWVSTAARNATIYDKVFRCLPNDEVHNLIQLRD
FINKPILAKEDRLRAEEELRKIRGFLVQFPLYFLSEENLLPSVGTKEAIVPMEVWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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