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Report for CCDS16933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16933.1 Public Mus musculus 2 1700003F12Rik 23 108 98 CCDS HistoryNCBI Gene:75480Re-query CCDS DB by CCDS ID:16933.1Re-query CCDS DB by GeneID:75480See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045116.10 ENSMUSP00000035523.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045116.10Link to Ensembl Protein Viewer:ENSMUSP00000035523.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045116Re-query CCDS DB by Protein ID:ENSMUSP00000035523
Original member Current member NCBI NM_029305.2 NP_083581.1 Accepted alive Link to Nucleotide Sequence:NM_029305.2Link to Protein Sequence:NP_083581.1Re-query CCDS DB by Nucleotide ID:NM_029305Re-query CCDS DB by Protein ID:NP_083581Link to BLAST:NP_083581.1

Chromosomal Locations for CCDS 16933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154548942 154549067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154549336 154549395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154549540 154549947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGGAAACAGCAGTTCCCACAAGAGGACCAAAGCACCCAATCAGGCCAACAAGGACAGGCCACCTGACA
TGGACAAAGCCCGTCACAAGCAGTTCTTCAGCCATCTCAAGAGGAAGAAGCCAAGTTGGCGAGAGGCTCC
TGACCCTGCCCGTGTGGGTGAGAACCCCCGCATCAAGGCTGGGAAAACCAAGATCGTGCTGCTTTTCCCG
CTGGACAAGCGGCAGCAGCTGGCCGAGGCAGCGGCGGGCCCATTTGTGAGGCCGGTGCGGCCAACTGAGG
ACCCGCTCGGCGCCCCAACGTGCTTCCCAGCGGTGGCGCCTATGCTACGTGGGGCTGGCGACGGCGTGGA
CAGGCGCGAAGGCGCGCGCGCTCGGGAGATGAAAAGGATCCTGGTGCTGCTGCTGCAGCTGGACGCACGG
CTGCAGGAGGAGGGGCGTCGAGTGGGAGGCAGGCCGGGGGGCGGGGCCAAGGTCCCGCAGTGCTGGCAGC
CGCTGTATGCGCACGTGCTGACCCAACGCGATGCCTGTGGTGAAGGCGACCCCCGCGAGGAGCAGCCGCG
CAAGCGGCGCCGCTGCCCTCGCCCGCGGCCCTGA

Translation (197 aa):
MGNSSSHKRTKAPNQANKDRPPDMDKARHKQFFSHLKRKKPSWREAPDPARVGENPRIKAGKTKIVLLFP
LDKRQQLAEAAAGPFVRPVRPTEDPLGAPTCFPAVAPMLRGAGDGVDRREGARAREMKRILVLLLQLDAR
LQEEGRRVGGRPGGGAKVPQCWQPLYAHVLTQRDACGEGDPREEQPRKRRRCPRPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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