NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16904.1 Public Mus musculus 2 Pdrg1 23 108 98 CCDS HistoryNCBI Gene:68559Re-query CCDS DB by CCDS ID:16904.1Re-query CCDS DB by GeneID:68559See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028972.8 ENSMUSP00000028972.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028972.8Link to Ensembl Protein Viewer:ENSMUSP00000028972.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028972Re-query CCDS DB by Protein ID:ENSMUSP00000028972
Original member NCBI NM_178939.2 NP_849270.1 Updated not alive Link to Nucleotide Sequence:NM_178939.2Link to Protein Sequence:NP_849270.1Re-query CCDS DB by Nucleotide ID:NM_178939Re-query CCDS DB by Protein ID:NP_849270
Current member NCBI NM_178939.3 NP_849270.1 Accepted alive Link to Nucleotide Sequence:NM_178939.3Link to Protein Sequence:NP_849270.1Re-query CCDS DB by Nucleotide ID:NM_178939Re-query CCDS DB by Protein ID:NP_849270Link to BLAST:NP_849270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849270.1 133 P59048 133 100% 0 0

Chromosomal Locations for CCDS 16904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153009654 153009736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153010258 153010338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153012381 153012455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153014010 153014085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153015234 153015320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGCTGTCCCCCGAGGCGGAGCGGGTGCTGCGGTACCTGGTCGAAGTAGAGGAGTTGGCCGAGGCCGTGC
TGTCGGACAAGCGGCAGATTGTAGACCTGGACACCAAGAGGAATCAGAACCGAGAGGGCCTGAGGGCCCT
ACAGAAGGACCTGAGTGTCTCTGAAGATGTGATGGTTTGCTTTGGGAACATGTTCATCAAAATGCCTCAC
CCTAAGACGAAGGAAATGATCCAGAAAGATCAAGAGCACCTGGATAAAGAAATAGAAAGGCTGCGGAGTC
AACTTAAAGTGAAAGTTAACCGCCTCTTTGAAGCCCAAGGAAAACCGGAGCTGAAAGGTTTTAACCTGAA
TCCCCTCAGCCCGGATGAGGTTAAAGCCCTCAAGGTCATCTTGAAAGGATGA

Translation (133 aa):
MLSPEAERVLRYLVEVEELAEAVLSDKRQIVDLDTKRNQNREGLRALQKDLSVSEDVMVCFGNMFIKMPH
PKTKEMIQKDQEHLDKEIERLRSQLKVKVNRLFEAQGKPELKGFNLNPLSPDEVKALKVILKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH