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Report for CCDS16720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16720.1 Public Mus musculus 2 Polr1b 23 108 98 CCDS HistoryNCBI Gene:20017Re-query CCDS DB by CCDS ID:16720.1Re-query CCDS DB by GeneID:20017See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103205.10 ENSMUSP00000099494.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103205.10Link to Ensembl Protein Viewer:ENSMUSP00000099494.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103205Re-query CCDS DB by Protein ID:ENSMUSP00000099494
Original member Current member NCBI NM_009086.2 NP_033112.2 Accepted alive Link to Nucleotide Sequence:NM_009086.2Link to Protein Sequence:NP_033112.2Re-query CCDS DB by Nucleotide ID:NM_009086Re-query CCDS DB by Protein ID:NP_033112Link to BLAST:NP_033112.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033112.2 1135 P70700 1135 100% 0 0

Chromosomal Locations for CCDS 16720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129101087 129101263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129102963 129103130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129103578 129103724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129105249 129105381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129107987 129108123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129109231 129109454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129110040 129110211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129112642 129112813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129113501 129113782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129115639 129115772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129117928 129118098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129119040 129119196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129123070 129123266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129123711 129123964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129125214 129126096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGGATGTCGACGGCCGGTGGCGGAACCTGCCCAGCGGGCCCAGCCTAAAGCATTTAACCGACCCCTCGT
ACGGGATTCCCCCAGAGCAGCAAAAGGCAGCTTTGCAGGACCTGACGCGGGCGCACGTGGACTCCTTCAA
CTACGCGGCGCTGGAGGGGCTGAGCCACGCGGTGCAGGCCATACCTCCCTTTGAATTTGCTTTCAAAGAT
GAGCGCATATCTCTTACCATTGTGGATGCTGTCATCAGTCCACCCTCAGTGCCCAAAGGGACCATCTGCA
AAGATCTCAACGTTTATCCAGCTGAGTGTCGTGGCCGAAAGAGCACCTACCGAGGGAGGCTGACGGCTGA
TATCAGCTGGGCCGTGAATGGAGTCCCCAAAGGGATCATTAAACAGTTTCTCGGCTATGTTCCCATCATG
GTGAAGTCCAAGCTTTGCAACTTATACAACCTTCCTCCTCGAGTCCTCATTGAGCACCATGAGGAGGCAG
AGGAAATGGGCGGTTATTTTATAATCAATGGCATAGAAAAAGTCATCCGCATGTTGATTGTGCCCCGGAG
AAATTTCCCCATCGCCATGGTAAGGCCGAAATGGAAAAGCAGAGGACTCGGCTACACTCAGTTTGGGGTC
TCCATGCGCTGTGTGAGAGAAGAGCACTCCGCCGTGAACATGAACCTGCACTATGTGGAGAACGGCACGG
TTATGTTAAACTTTATTTACCGCAAAGAGCTCTTTTTCCTTCCTTTGGGATTTGCACTTAAGGCACTCGT
GAGCTTTTCTGATTATCAGATTTTCCAGGAGCTTATCAAGGGCAAAGAGGAGGACTCTTTCTTTAGGAAT
TCTGTTTCTCAGATGCTGCGGATTGTCATAGAAGAGGGCTGTCACTCACAGAAGCAGGTTCTTAACTATC
TGGGAGAATGCTTCCGAGTGAAGCTCAGCCTTCCTGATTGGTACCCTAACGTGGAAGCTGCCGAGTTCCT
GCTTAACCAGTGCATCTGCATCCACCTGCAGTCCAACACTGACAAGTTCTACCTGCTCTGCCTCATGACC
CGGAAGCTGTTCGCTTTAGCCAGAGGGGAGTGCATGGACGACAACCCTGATAGCCTAGTGAACCAAGAGG
TCCTCAGCCCTGGGCAGCTCTTCCTGATGTTTCTGAAGGAAAAAATGGAAAACTGGCTAGTGTCTATTAA
AATAGTTTTAGATAAGAGGGCTCAGAAGGCCAATGTTTCCATAAACAACGAAAATTTGATGAAGATTTTT
AGTATGGGAACAGAGCTAACAAGACCATTTGAATATCTTCTTGCTACTGGGAATCTGCGTTCTAAAACAG
GTCTCGGCTTCCTGCAAGATTCTGGCCTGTGTGTTGTGGCTGACAAGCTGAACTTCCTTCGCTACCTCTC
CCATTTCCGCTGTGTGCACAGAGGGGCTGCCTTTGCCAAGATGAGGACCACCACCGTGCGCAGGCTGCTG
CCAGAATCCTGGGGCTTCCTCTGCCCTGTGCACACTCCAGACGGGGCGCCTTGTGGGCTGTTGAACCACT
TGACTGCCGTGTGTGAGGTTGTTACCAAGTTTGTGTACACGGCATCTATTCCAGCCTTGCTCTGTGGCTT
AGGAGTCACTCCTGTTGATACAGCGCCATGTCGACCGTACAGTGACTGCTACCCTGTCCTGCTGGATGGC
GTCATGGTGGGCTGGGTGGATAAGGACCTTGCTCCTGAAGTTGCAGACACTCTCCGTCGATTCAAGGTGT
TGAGAGAAAAAAGAATTCCTCCCTGGATGGAGGTGGCCCTGATTCCCATGACAGGAAAACCAAGTCTGTA
CCCAGGTCTGTTCCTCTTTACCACTCCCTGCAGGCTGGTGAGGCCTGTGCAGAACTTGGAACTGGGCAGA
GAAGAGCTCATTGGAACCATGGAACAGCTCTTCATGAACGTCGCCATCTTTGAGGACGAGGTGTTTGGTG
GCATCTCCACACACCAGGAGCTCTTCCCTCACAGCCTGCTGAGCGTGATCGCCAACTTCATCCCCTTCTC
GGATCACAACCAGAGTCCTCGGAACATGTACCAGTGCCAGATGGGTAAGCAGACCATGGGCTTTCCGCTG
CTCACTTACCAAAACCGATCAGATAATAAACTCTATCGACTCCAAACCCCTCAGAGCCCTCTAGTGAGAC
CGTGCATGTATGATTTCTATGACATGGACAACTATCCGATCGGGACAAACGCCATTGTAGCTGTGATCTC
CTACACTGGCTATGATATGGAGGACGCCATGATTGTCAACAAGGCTTCCTGGGAACGAGGCTTCGCTCAT
GGAAGCGTCTACAAGTCTGAGTTCATAGACCTCTCAGAGAAGTTTAAGCAGGGAGAGGATAACCTGGTGT
TCGGGGTCAAGCCTGGTGACCCTCGGGTGATGCAGAAGCTGGACGATGATGGGTTGCCATTCATAGGCGC
AAAGCTGGAGTATGGCGACCCTTACTACAGCTACCTCAACCTTAACACTGGGGAAGGCTTCGTGGTTTAC
TACAAGAGTAAAGAAAACTGTGTTGTGGACAACATCAAAGTGTGTAGTAACGACATGGGCAGTGGGAAGT
TCAAGTGTATCTGCATCACAGTCCGCATCCCCCGGAACCCAACCATTGGAGATAAGTTTGCCAGCCGACA
TGGTCAGAAGGGCATTTTGAGCAGATTGTGGCCAGCCGAGGACATGCCTTTCACTGAGAGTGGCATGATG
CCGGACATTCTGTTTAATCCTCACGGGTTTCCCTCCCGTATGACCATAGGTATGTTAATCGAGAGCATGG
CTGGGAAGTCTGCAGCTTTGCACGGTCTCTGCCATGATGCTACACCCTTCATCTTCTCCGAGGAGAACTC
TGCCTTAGAGTACTTTGGTGAGATGTTAAAGGCTGCTGGCTACAACTTCTACGGCACCGAGAGACTGTAT
AGTGGCATCAGTGGGATGGAGCTGGAGGCTGACATCTTCATTGGTGTGGTTTATTACCAGCGCTTACGAC
ACATGGTGTCAGACAAATTTCAAGTCAGAACAACTGGAGCCAGGGACAAAGTCACCAACCAGCCCCTCGG
GGGACGAAATGTTCAGGGTGGAATCCGCTTTGGGGAGATGGAGCGGGATGCTCTGTTGGCACACGGTACG
TCTTTCCTTCTTCATGACCGGCTTTTCAACTGCTCTGACCGTTCTGTCGCTCACATGTGTGTAGAGTGTG
GCAGTTTGCTTTCTCCGCTACTTGAGAAGCCTCCTCCGTCTTGGTCTGCGATGCGCAACAGAAAGTACAA
CTGCACTGTCTGTGGCCGCAGTGACACCATCGACACCGTCTCTGTGCCGTATGTCTTCCGGTACTTTGTA
GCTGAGCTGGCAGCCATGAACATCAAAGTGAAACTGGATGTCATCTGA

Translation (1135 aa):
MDVDGRWRNLPSGPSLKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKD
ERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIM
VKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGV
SMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRN
SVSQMLRIVIEEGCHSQKQVLNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMT
RKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIF
SMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLL
PESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYPVLLDG
VMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGR
EELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL
LTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAH
GSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVY
YKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMM
PDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLY
SGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGT
SFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFV
AELAAMNIKVKLDVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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