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Report for CCDS16514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16514.1 Reviewed, withdrawal pending Mus musculus 2 Potefam1 23 108 98 CCDS HistoryNCBI Gene:67575Re-query CCDS DB by CCDS ID:16514.1Re-query CCDS DB by GeneID:67575See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 16514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028577.2 ENSMUSP00000028577.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028577.2Link to Ensembl Protein Viewer:ENSMUSP00000028577.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028577Re-query CCDS DB by Protein ID:ENSMUSP00000028577
Original member NCBI NM_026248.3 NP_080524.2 Removed alive Link to Nucleotide Sequence:NM_026248.3Link to Protein Sequence:NP_080524.2Re-query CCDS DB by Nucleotide ID:NM_026248Re-query CCDS DB by Protein ID:NP_080524Link to BLAST:NP_080524.2

Chromosomal Locations for CCDS 16514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111193446 111193519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111194159 111194231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111194323 111194351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111198064 111198133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111200351 111200418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111203950 111204022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111204115 111204143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111211547 111211643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111214584 111214656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111215584 111215617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111218595 111218659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111220677 111220814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111225405 111225511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111227919 111228092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111228252 111228366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111229174 111229412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGAAGAAGATCTTGGTTCATGGAGTTAAAGAAAAGACACCATTGGGTTTCTGCGATGTCCCAAGGAAAA
AC
CTGTTGGACTTTTTACGTGATATGAAAAGTATTTCTGTCCCAAATGAACCGAGATACAAACCTCTCAG
A
AAGATCCACCAGGCTGCAAGCGACGGTGATACAGAGAGACTACAGAGAATGATAAGTCTTGGGAAACAC
AGT
GTGCATGACAGAGACTTTAAGGAAAGGACTGCCCTGCATTTTGCCTGTGCCTGTGGCCAGGTGGAAG
TA
GTAAGTATTCTATTGAGAAATAACTGTGATATTGACGCTGCTGACATGAACTTCATCACGCCTCTGAT
G
AAGGCTGTTCAAAACTGGACATATGAATGTGTGTGCATATTATTGAAGCATGGTGCTGATCCAAACCGA
AAG
GACAAAAATGGCAATACTTCTCTTCACTACGCTGTGTCAGAAGATAACCAGACACTCGCCAAATGCT
TG
CTTAAGTACAGTGCAAACATGGAACAAAAGAACAAGGATGGCTTTACACCACTTTTACTGGCTCTCAA
G
GAAAACAAAATAGAGATGGCAAAGTTTTTAGTAAAGATGGGGGCAAATATACATGTATTTGATGACATG
AGA
AGAAACACACTCTTATATGCCATAAGATGGGACTCAAAAGATATGGTCAACCTACTTTTGGATGAAG
GC
ATTGACTTTTTCTTTAGAGATGTATTTGGGTGGACTGCATTACGGTATGCTATTGAAGGCACAAGTAA
A
GGTAGTCGAGAGATTCTTATGAACTATGATGAAATGTTACGTAGAAAAAATAAAGATGGCATTCCAGAA
TAC
AAGTTTTTTGAAGACAAGTCATTAGACAAGCATCCCAATAACCCTACTTCTGGATCTACCTTTCCTA
AA
TCAAATGAGAATGCATGCAAGTTTGATGATGAGCTGGATATTTCTAAGTATGTTCTTGGTACGTGTCC
T
AATAATATACATGGGGCTGGAGAGGAAGGAGACAAAAGTGAAACAAAAAAAGCAGCAGATGTTCAAGTT
TGG
ACGAATCCTACCTTGAAGTCTTCCACTAAAGGGAAAGTGCCCAATCTGAATGAAGTAGGAACAATGA
CA
GAATCACATCATTTCATAAAAGAATCAGACTTAGAAATTGAGTCACTGGTGGAAACATTTTCATATGA
C
AATGAAGACAAACAGTCAATGAGTGATGATGGACATTTTTCTGGAACAACACCCAAATGGTGTCAAAAT
GAT
ACAAATAGAAAAACTACAGTTCAAGACTGCATGTATCCTAACTTGAAGTCTCCCACTGAGGGGAAAA
TA
CCTACCCGCAGTAAAGCAGGAAAAATGGCGGAATCAGCTCATTTCATAATAGAATCAGATTTGGAAAT
T
GAATCTCTGGAAGAAACTGTGTCATGTGACAGTGAAGATAAACAACTACTGGTATAA


Translation (485 aa):
MKKILVHGVKEKTPLGFCDVPRKNLLDFLRDMKSISVPNEPRYKPLRKIHQAASDGDTERLQRMISLGKH
S
VHDRDFKE
RTALHFACACGQVEVVSILLRNNCDIDAADMNFITPLMKAVQNWTYECVCILLKHGADPNR
K
DKNGNTSLHYAVSEDNQTLAKCLLKYSANMEQKNK
DGFTPLLLALKENKIEMAKFLVKMGANIHVFDDM
R
RNTLLYAIRWDSKDMVNLLLDEGIDFFFRDVFGWTALRYAIEGTSKGSREILMNYDEMLRRKNKDGIPE
Y
KFFEDKSLD
KHPNNPTSGSTFPKSNENACKFDDELDISKYVLGTCPNNIHGAGEEGDKSETKKAADVQV
W
TNPTLK
SSTKGKVPNLNEVGTMTESHHFIKESDLEIESLVETFSYDNEDKQSMSDDGHFSGTTPKWCQN
D
TNRKTT
VQDCMYPNLKSPTEGKIPTRSKAGKMAESAHFIIESDLEIESLEETVSCDSEDKQLLV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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