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Report for CCDS16377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16377.1 Public Mus musculus 2 Or4a15 23 108 98 CCDS HistoryNCBI Gene:258975Re-query CCDS DB by CCDS ID:16377.1Re-query CCDS DB by GeneID:258975See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099783.1 ENSMUSP00000097371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099783.1Link to Ensembl Protein Viewer:ENSMUSP00000097371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099783Re-query CCDS DB by Protein ID:ENSMUSP00000097371
Original member Current member EBI ENSMUST00000111543.1 ENSMUSP00000107168.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111543.1Link to Ensembl Protein Viewer:ENSMUSP00000107168.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111543Re-query CCDS DB by Protein ID:ENSMUSP00000107168
Original member Current member EBI ENSMUST00000137692.2 ENSMUSP00000149303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137692.2Link to Ensembl Protein Viewer:ENSMUSP00000149303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137692Re-query CCDS DB by Protein ID:ENSMUSP00000149303
Original member Current member NCBI NM_146973.2 NP_667184.2 Accepted alive Link to Nucleotide Sequence:NM_146973.2Link to Protein Sequence:NP_667184.2Re-query CCDS DB by Nucleotide ID:NM_146973Re-query CCDS DB by Protein ID:NP_667184Link to BLAST:NP_667184.2

Chromosomal Locations for CCDS 16377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89362483 89363427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAAAACAGGAACAATGTGACTGAATTTATCCTTCTGGGCCTCACTCAGAATCCAGAAGGCCAAAAGG
TTCTGTTTGTCACATTCTTGCTCATCTACATTGTGACAGTAATGGGCAATCTGCTCATCATGGTGACCAT
CATGGCTAGCCACTCCCTCGGCTCTCCTATGTACTTCTTTCTGGCTTATTTGTCATTTATAGATACTGTC
TATTCTACTTCCATTGCTCCCAAAATGATTATTGACTTGCTCTATGAAACAAAGACCATCTCCTTCCGGG
CTTGTATGACTCAAGTTTTTATAGATCATTTATTTGCTGGAGCTGAGGTTATTCTTCTGGTGGTGATGGC
CTATGACCGTTATGTGGCCATCTGTAAACCTCTTCATTATTTGACCATCATGAATCGACGAGTGTGTGTT
CTCATGCTGCTGGGGGCCTGGATTGGTGGCTTTCTTCACTCATTAATTCAATTTATCTTCATTTATCAGC
TTCCTTTCTGTGGCCCAAATATCATTGATAGCTTTGTATGTGATATGTATCCTCTGCTAAAACTGGCTTG
CACCAATACCTACCTTATAGGGCTTTGTATGATTGCTAATGGAGGAGCAATTTGTACCGTCACCTTTTTA
ATTCTCCTAGTTTCTTATGGAGTCATTTTACACTCCCTTAAGGCACATAGTCTGGAAGGGAAGCGCAAAG
CTTTGTACACATGTGCATCCCACATTACTGTGGTTGTTTTATTCTTTGTTCCATGCATCTTTCTATATGC
AAGGCCTACATCCACATTTCCAATTGATAAGTCTGTGACTGTTGTCTTAACTTTCATAACTCCGATGCTG
AACCCCTTAATCTACACCTTGAGGAATGCAGAAATGAAAAATGCTATGAAGAGACTTTGGAGCAAAAAAT
CTAGCTCCATCGTAAGTGGGCTATATCACTCTTGA

Translation (314 aa):
MENRNNVTEFILLGLTQNPEGQKVLFVTFLLIYIVTVMGNLLIMVTIMASHSLGSPMYFFLAYLSFIDTV
YSTSIAPKMIIDLLYETKTISFRACMTQVFIDHLFAGAEVILLVVMAYDRYVAICKPLHYLTIMNRRVCV
LMLLGAWIGGFLHSLIQFIFIYQLPFCGPNIIDSFVCDMYPLLKLACTNTYLIGLCMIANGGAICTVTFL
ILLVSYGVILHSLKAHSLEGKRKALYTCASHITVVVLFFVPCIFLYARPTSTFPIDKSVTVVLTFITPML
NPLIYTLRNAEMKNAMKRLWSKKSSSIVSGLYHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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