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Report for CCDS16122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16122.1 Public Mus musculus 2 Sp3 23 108 98 CCDS HistoryNCBI Gene:20687Re-query CCDS DB by CCDS ID:16122.1Re-query CCDS DB by GeneID:20687See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102689.9 ENSMUSP00000099750.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102689.9Link to Ensembl Protein Viewer:ENSMUSP00000099750.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102689Re-query CCDS DB by Protein ID:ENSMUSP00000099750
Original member Current member NCBI NM_001018042.3 NP_001018052.1 Accepted alive Link to Nucleotide Sequence:NM_001018042.3Link to Protein Sequence:NP_001018052.1Re-query CCDS DB by Nucleotide ID:NM_001018042Re-query CCDS DB by Protein ID:NP_001018052Link to BLAST:NP_001018052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018052.1 783 O70494-1 783 100% 0 0

Chromosomal Locations for CCDS 16122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 72938066 72938382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72940543 72940739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72946546 72946738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72970155 72971514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72978898 72979029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72979487 72979632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72980250 72980256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGACCGCTCCCGAAAAGCCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGACGGCGGCGGAGGCG
GCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGCGGC
GGCGGCGGCCCAGGACACTCAGCCGTCACCGCTCGCTCTGCTGGCCGCTACCTGCAGCAAGATAGGGCCG
CCATCGCCGGGCGACGACGACGAGGAGGCGGCCGTTGCCGCCGCCGCCGGGGTCCCCGCCGCCGCCGCCG
GAGCGACAGGTGATTTGGCTTCTGCACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTTGTCAGCTAC
ACCTACAACTATAAAAGATGAAGCTGGTAATCTAGTACAGATTCCAGGTGCTGCTACTTCAAGTGGGCAG
TATGTCCTTCCCCTTCAGAATTTGCAGAATCAACAAATATTTTCAGTTGCACCAGGATCAGATTCATCAA
ATGGCACAGTGTCCAATGTTCAGTATCAAGTAATACCACAAATTCAGTCAACAGACGCTCAGCAGGTTCA
GATTGGCTTCACAGGCTCCTCAGATAATGGGGGCATAAATCAAGAAAACAGCCAAATTCAGATCATTCCT
GGCTCTAATCAAACCTTACTCGCCTCTGGAACACCTCCTGCTAATATCCAGAATCTCATACCACAGACTG
GTCAAGTCCAGGTTCAGGGAGTTGCAATTGGTGGCTCATCATTTCCTGGCCAAACTCAAGTAGTCGCTAA
TGTGCCTCTTGGTCTGCCAGGAAATATTACCTTTGTACCAATCAATAGTGTCGATCTAGATTCTTTGGGA
CTCTCGGGAAGTTCTCAGACAATGACTGCAGGCATTAATGCCGATGGACATTTGATAAACACAGGACAAG
CTATGGATAGTTCAGACAATTCAGAAAGGACTGGTGAGCGGGTTTCTCCTGATGTTAATGAAACTAATGC
TGATACAGATTTATTTGTGCCAACATCCTCTTCATCACAGTTGCCTGTTACAATAGATAGTACAGGTATA
TTACAGCAAAACACAAATAGCTTGACTACTACTAGTGGGCAAGTCCATTCTTCAGATCTTCAGGGAAATT
ATATCCAGTCGCCTGTTTCTGAAGAGACACAGGCTCAGAATATTCAGGTTTCTACAGCACAGCCTGTTGT
ACAACATCTACAACTTCAAGATTCTCAGCAGCCAACCAGTCAAGCCCAAATTGTGCAAGGTATTACACCA
CAGACAATCCATGGCGTGCAAGCCAGTGGTCAAAATATATCACAACAGGCTTTGCAAAACCTTCAGTTGC
AGCTGAATCCTGGAACCTTTTTAATTCAGGCACAGACAGTGACCCCTTCTGGACAGATAACTTGGCAAAC
ATTTCAAGTACAAGGGGTCCAGAACTTACAGAATTTGCAAATACAAAATACTGCTGCCCAACAAATTACT
TTGACGCCTGTTCAGACACTCACGCTTGGTCAAGTCGCAGCAGGTGGAGCCTTGACTTCAACTCCAGTCA
GTCTAAGCACTGGTCAGTTGCCAAATCTACAGACAGTTACAGTAAATTCTATAGATTCTACTGGCATACA
GCTACATCCAGGAGAGAATGCCGACAGTCCTGCAGATATTAGGATCAAGGAAGAGGAACCTGACCCTGAA
GAATGGCAGCTCAGTGGTGACTCTACACTGAACACCAATGACCTAACACATTTACGAGTACAAGTGGTAG
ATGAAGAAGGGGACCAACAACATCAAGAAGGAAAAAGACTTCGGAGGGTAGCTTGCACCTGTCCCAACTG
TAAAGAAGGTGGTGGGAGAGGTACCAATCTTGGGAAAAAGAAGCAACACATTTGTCATATACCGGGATGT
GGTAAAGTCTATGGGAAGACCTCACATCTGAGAGCACACCTGCGTTGGCATTCGGGGGAGCGCCCTTTTA
TTTGTAACTGGATGTTCTGTGGTAAAAGATTTACACGAAGTGATGAATTACAGAGGCACAGAAGAACACA
TACAGGTGAGAAGAAGTTTGTTTGTCCAGAATGTTCAAAACGCTTTATGAGAAGTGACCACCTTGCCAAA
CATATTAAAACACATCAAAATAAAAAAGTCATTCACTCTAGCAGTACAGTGCTCGCATCTGTGGAAGCTG
GAAGAGATGATGCCTTGATTACTGCAGGAGGAACAACACTTATCCTTGCAAATATTCAACAGGGGTCTGT
GTCAGGGATAGGAACTGTCAATACTTCTGCCACCAGCAATCAAGACATCCTTACCAACACTGAAATACCT
TTACAGCTTGTCACAGTTTCTGGAAATGAGACAATGGAGTAA

Translation (783 aa):
MTAPEKPVKQEEMAALDVDGGGGGGGHGEYLQQQQQQQQQHGNGAAAAAAQDTQPSPLALLAATCSKIGP
PSPGDDDEEAAVAAAAGVPAAAAGATGDLASAQLGGAPNRWEVLSATPTTIKDEAGNLVQIPGAATSSGQ
YVLPLQNLQNQQIFSVAPGSDSSNGTVSNVQYQVIPQIQSTDAQQVQIGFTGSSDNGGINQENSQIQIIP
GSNQTLLASGTPPANIQNLIPQTGQVQVQGVAIGGSSFPGQTQVVANVPLGLPGNITFVPINSVDLDSLG
LSGSSQTMTAGINADGHLINTGQAMDSSDNSERTGERVSPDVNETNADTDLFVPTSSSSQLPVTIDSTGI
LQQNTNSLTTTSGQVHSSDLQGNYIQSPVSEETQAQNIQVSTAQPVVQHLQLQDSQQPTSQAQIVQGITP
QTIHGVQASGQNISQQALQNLQLQLNPGTFLIQAQTVTPSGQITWQTFQVQGVQNLQNLQIQNTAAQQIT
LTPVQTLTLGQVAAGGALTSTPVSLSTGQLPNLQTVTVNSIDSTGIQLHPGENADSPADIRIKEEEPDPE
EWQLSGDSTLNTNDLTHLRVQVVDEEGDQQHQEGKRLRRVACTCPNCKEGGGRGTNLGKKKQHICHIPGC
GKVYGKTSHLRAHLRWHSGERPFICNWMFCGKRFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAK
HIKTHQNKKVIHSSSTVLASVEAGRDDALITAGGTTLILANIQQGSVSGIGTVNTSATSNQDILTNTEIP
LQLVTVSGNETME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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