NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15649.1 Public Mus musculus 2 Dclre1c 23 108 98 CCDS HistoryNCBI Gene:227525Re-query CCDS DB by CCDS ID:15649.1Re-query CCDS DB by GeneID:227525See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061852.11 ENSMUSP00000054300.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061852.11Link to Ensembl Protein Viewer:ENSMUSP00000054300.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061852Re-query CCDS DB by Protein ID:ENSMUSP00000054300
Original member Current member NCBI NM_175683.4 NP_783614.1 Accepted alive Link to Nucleotide Sequence:NM_175683.4Link to Protein Sequence:NP_783614.1Re-query CCDS DB by Nucleotide ID:NM_175683Re-query CCDS DB by Protein ID:NP_783614Link to BLAST:NP_783614.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783614.1 603 Q8K4J0-2 603 100% 0 0

Chromosomal Locations for CCDS 15649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3424218 3424326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3425364 3425415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3429268 3429352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3433747 3433806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3436438 3436493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3436989 3437090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3437676 3437748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3437952 3438092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3440758 3440859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3443654 3443790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3444201 3444255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3447074 3447162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3450279 3450373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3452848 3453198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3457544 3457584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3458691 3458954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGAGCTCCTTCCAGGGACAGATGGCGGAGTATCCAACCATCTCCATTGACCGCTTCGACAGGGAGAACC
TGAAAGCCCGTGCCTACTTCCTTTCGCACTGTCACAAGGATCACATGAAAGGATTAAGGGCTCCTTCCTT
GAAAAGAAGGCTGGAATGCAGCTTGAAGGTCTTCCTGTACTGTTCTCCAGTCACTAAGGAGCTGTTGTTA
ACTAGCCCAAAGTACAGATTCTGGGAAAACAGAATTATAACAATTGAAATTGAAACTCCTACGCAGATAT
CTTTAGTTGATGAGGCTTCGGGTGAGAAGGAAGAGGTTGTTGTGACTCTCTTACCAGCTGGTCACTGCCC
AGGATCAGTTATGTTTTTATTTCAGGGCAGTAATGGAACTGTCTTATACACAGGAGACTTCAGACTGGCA
AAAGGAGAAGCTTCCAGAATGGAGCTTCTGCACTCTGGAGGCAGAGTAAAAGACATCCAAAGTGTGTATT
TAGACACGACTTTCTGTGACCCAAGGTTTTATCAGATCCCAAGTCGTGAGCAGTGTTTGAGGGGCATTTT
GGAGCTGGTTCGGAGCTGGGTCACTAGGAGTCCGCACCACGTCGTGTGGCTGAACTGTAAAGCAGCTTAT
GGCTACGAGTATTTATTCACCAACCTAAGCGAGGAGCTGGGAGTTCAGGTTCATGTGGACAAGCTGGACA
TGTTTAAAAACATGCCTGATATCCTGCACCATCTCACAACGGACAGAAACACCCAGATCCACGCCTGCCG
CCACCCAAAGGCAGAAGAGTGTTTTCAGTGGAATAAACTACCCTGTGGTATAACTTCCCAAAACAAAACT
GCACTCCACACAATCAGCATCAAGCCATCTACCATGTGGTTTGGAGAGAGGACCAGAAAAACCAACGTGA
TCGTTAGGACTGGAGAGAGCTCATACAGAGCTTGCTTCTCTTTTCACTCCTCCTTCAGTGAGATTAAAGA
TTTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCAAATGTCATCCCAGTTGGCCTCACTGTGGATAAG
GTCATGGACGTTTTAAAGCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTTGGAA
AATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGAGGAAGACGATGATCTCTTTGATGACCCTCTACC
GACACCTTTAAGGCACAAAGTTCCGTACCAGCTAACTCTTCAGCCTGAGCTGTTTTCAATGAAGGCACTG
CCACTAGACCAGCCTGAACTGAGACAAAGCCCAGGAGGCTGCAAAGCAGAGAGTGTGTGGAGCCCTTCTT
TGGCTAACTTCATAGACTGTGAAGAATCCAACAGCGACAGTGGAGAAGAGCTAGAAACCCCACCACCCTC
ACTGCAGGGAGGTCTGGGCCCCTCGACACTCGTCCAGCAAAATGCTGATCCGGATGTGGACATACCACAG
TGGGAAGTCTTCTTCAAAAGAAGAGATGAAATCACAGTGGACACCATGATTAGAACTCCCAGACCCAGAA
AGATGAAAGGCTGTGGTCAATGGAGTCTGAAGATGCTTCTCCAGAACCTGGAAATACAGGAAGAGAAACA
TATATTTGAGAACAGGGGCTGGAAGATGGCTGGGCAGGTAAAGGGTAGCTGTGGTCTTTTGGAGGGCCAG
AGTTCACTCCCAACATTCAAGCTAGCCACCTCCCTAGCCTCAAACTCCAGCTTCTGGCCTCCATGGCACC
TGCATTCACATGCGCACACACAAATCTTTACCTTTAAAAAAAAAACCAAAACTTTACTTTAG

Translation (603 aa):
MSSFQGQMAEYPTISIDRFDRENLKARAYFLSHCHKDHMKGLRAPSLKRRLECSLKVFLYCSPVTKELLL
TSPKYRFWENRIITIEIETPTQISLVDEASGEKEEVVVTLLPAGHCPGSVMFLFQGSNGTVLYTGDFRLA
KGEASRMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREQCLRGILELVRSWVTRSPHHVVWLNCKAAY
GYEYLFTNLSEELGVQVHVDKLDMFKNMPDILHHLTTDRNTQIHACRHPKAEECFQWNKLPCGITSQNKT
ALHTISIKPSTMWFGERTRKTNVIVRTGESSYRACFSFHSSFSEIKDFLSYICPVNVYPNVIPVGLTVDK
VMDVLKPLCRSPQSVEPKYKPLGKLKRARTIHLDSEEDDDLFDDPLPTPLRHKVPYQLTLQPELFSMKAL
PLDQPELRQSPGGCKAESVWSPSLANFIDCEESNSDSGEELETPPPSLQGGLGPSTLVQQNADPDVDIPQ
WEVFFKRRDEITVDTMIRTPRPRKMKGCGQWSLKMLLQNLEIQEEKHIFENRGWKMAGQVKGSCGLLEGQ
SSLPTFKLATSLASNSSFWPPWHLHSHAHTQIFTFKKKTKTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH