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Report for CCDS15521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15521.1 Public Mus musculus 1 Or10j5 23 108 98 CCDS HistoryNCBI Gene:18313Re-query CCDS DB by CCDS ID:15521.1Re-query CCDS DB by GeneID:18313See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038432.6 ENSMUSP00000041524.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038432.6Link to Ensembl Protein Viewer:ENSMUSP00000041524.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038432Re-query CCDS DB by Protein ID:ENSMUSP00000041524
Original member Current member EBI ENSMUST00000215254.1 ENSMUSP00000149249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215254.1Link to Ensembl Protein Viewer:ENSMUSP00000149249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215254Re-query CCDS DB by Protein ID:ENSMUSP00000149249
Original member Current member NCBI NM_008763.2 NP_032789.1 Accepted alive Link to Nucleotide Sequence:NM_008763.2Link to Protein Sequence:NP_032789.1Re-query CCDS DB by Nucleotide ID:NM_008763Re-query CCDS DB by Protein ID:NP_032789Link to BLAST:NP_032789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032789.1 309 Q62007 309 100% 0 0

Chromosomal Locations for CCDS 15521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172956797 172957726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGCAGAGAAATAACTTCACTGAAGTGATAGAGTTCGTCTTCCTGGGATTCTCCAGCTTTGGAAAGCATC
AGATAACCCTCTTTGTGGTTTTCCTAACCATCTACATTTTAACTCTGGCTGGCAACATCATTATAGTGAC
AATCACACACATAGACCACCACCTTCACACTCCCATGTACTTCTTTCTGAGCATGTTGGCAAGCTCAGAG
ACTGTGTACACACTGGTCATTGTCCCACGGATGCTTTCCAGCCTGATTTTTTACAACCTTCCCATATCCT
TGGCAGGCTGCGCAACCCAAATGTTCTTTTTTGTCACCTTGGCCACCAACAACTGCTTTCTGCTCACAGC
AATGGGTTATGATCGTTATGTGGCTATTTGTAATCCTCTGAGATATACAATCATCATGAGCAAGGGAATG
TGTGCCTTGTTGGTTTGTGGGTCTTTAGGCACTGGCCTGGTTATGGCAGTTCTTCATGTGCCAGCCATGT
TCCATTTGCCCTTTTGTGGCACGGTGGTGGAGCACTTTTTCTGTGACATATACCCAGTAATGAAGCTTTC
TTGTGTTGATACCACTGTCAATGAGATAATCAATTATGGTGTAAGTTCATTTGTAATTCTTGTGCCCATA
GGGCTGATATTTATCTCCTATGTGCTCATTGTCTCTTCCATCCTTAAAATTGTGTCCACTGAAGGCCAGA
AGAAAGCCTTTGCCACCTGTGCCTCTCATCTCACTGTGGTCATTGTCCACTATGGCTGTGCCTCCATTGC
CTACCTCAAACCCAAATCAGAAAGTTCAGTAGAAAAAGACCTTCTTCTCTCTGTGACCTACACCATCATC
ACTCCCTTGCTGAACCCTGTTGTCTACAGCCTCAGGAACAAAGAAGTCAAAGATGCTCTATGCAGAGCTG
TGGGCAGAAACACTTCTTAA

Translation (309 aa):
MQRNNFTEVIEFVFLGFSSFGKHQITLFVVFLTIYILTLAGNIIIVTITHIDHHLHTPMYFFLSMLASSE
TVYTLVIVPRMLSSLIFYNLPISLAGCATQMFFFVTLATNNCFLLTAMGYDRYVAICNPLRYTIIMSKGM
CALLVCGSLGTGLVMAVLHVPAMFHLPFCGTVVEHFFCDIYPVMKLSCVDTTVNEIINYGVSSFVILVPI
GLIFISYVLIVSSILKIVSTEGQKKAFATCASHLTVVIVHYGCASIAYLKPKSESSVEKDLLLSVTYTII
TPLLNPVVYSLRNKEVKDALCRAVGRNTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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