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Report for CCDS15511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15511.1 Public Mus musculus 1 Igsf8 23 108 98 CCDS HistoryNCBI Gene:140559Re-query CCDS DB by CCDS ID:15511.1Re-query CCDS DB by GeneID:140559See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039506.14 ENSMUSP00000041232.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039506.14Link to Ensembl Protein Viewer:ENSMUSP00000041232.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000039506Re-query CCDS DB by Protein ID:ENSMUSP00000041232
Original member Current member EBI ENSMUST00000085912.9 ENSMUSP00000083076.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085912.9Link to Ensembl Protein Viewer:ENSMUSP00000083076.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085912Re-query CCDS DB by Protein ID:ENSMUSP00000083076
Original member Current member NCBI NM_080419.2 NP_536344.1 Accepted alive Link to Nucleotide Sequence:NM_080419.2Link to Protein Sequence:NP_536344.1Re-query CCDS DB by Nucleotide ID:NM_080419Re-query CCDS DB by Protein ID:NP_536344Link to BLAST:NP_536344.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536344.1 611 Q8R366 611 99.6727% 0 2

Chromosomal Locations for CCDS 15511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172312536 172312593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172316151 172316528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172317355 172317816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172318037 172318444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172318554 172318967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172319293 172319408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGGCGTCCCTAGCCCCACGCCGCTGAGTTCGCTCCTGCTGCTGCTGCTAATACTTGGAACCAGGTGCT
AC
GCCCGGCAGGTGCATGTCCCCAGGGGACCTCTTTACCGGGTGGCTGGCACCGCTGTCTCTATCTCCTG
C
AACGTGAGTGACTATGAGGGCCCTGCCCAGCAAGACTTCGAGTGGTTCATGTACAGACCAGAGGCCCCA
GCT
ACGTCCCTGGGCATTGTCAGCACCAAGGATAGCCAGTTCTCCTATGCTGTCTTTGGGCCTCGTGTGG
CA
TCTGGTGACCTGCAGGTGCAGCGCCTGAAGGGAGATTCGGTGGTGCTCAAGATTGCTCGCCTGCAGGC
C
CAGGACTCTGGCTTTTATGAGTGCTACACCCCCTCCACAGATACGCAGTACCTGGGCAACTACAGTGCC
AAG
GTGGAGCTGAGAGTTCTTCCAGATGAGCTGCAGGTATCTGCTGCCCCTCCAGGGCCCCGAGGGCGCC
AG
GCTGCCACCTCCCCCTCACGCCTCACAGTGCACGAGGGGCAGGAGCTTGCGCTGGGCTGCCTGGCTCA
G
ACCAAAACAAAGAAACACACACACCTGTCGGTGTCCTTTGGGAGAGCCATTCCGGAGGCGCCAGTGGGG
CGA
GCCACTCTACAGGAAGTAGTGGGACTGCACTCCGACATGGCGGTGGAGGCTGGAGCGCCCTACGCTG
AG
AGGCTAGCTTCTGGGGAGCTTCGGCTGAGCAAGGAAGGGACTGATCGGTACCGAATGGTGGTTGGGGG
T
GCCCAGGCTGGAGACTCGGGCACCTACCACTGTACGGCCGCTGAGTGGATTCAGGATCCTGACGGCTCC
TGG
GTCCAGGTCGCAGAGAAGAGGGCAGTCCTGGCTCATGTTGATGTGCAGACTCTGTCCAGCCAGCTGG
CG
GTGACCGTGGGACCTGGTGAACGTCGGATTGGCCCAGGCGAACCCTTAGAACTGCTGTGCAATGTGTC
C
GGTGCACTGCCCCCACCAGGCCGTCATGCTGCGTACTCTGTGGGCTGGGAGATGGCCCCTGCAGGGGCT
CCT
GGACCCGGCCGCCTGGTGGCCCAGCTGGACACGGAAGGTATAGGCAGCCTGGGCCCTGGCTATGAGG
AC
CGGCACATTGCCATGGAGAAAGTAGCATCCAGAACCTACCGACTGCGGCTGGAGGCTGCCAGGCCCGC
T
GATGCAGGCACCTACCGCTGCCTCGCCAAAGCCTATGTTCGAGGGTCTGGGACCCGGCTTCGTGAAGCG
GCC
AGTGCTCGTTCCCGGCCTCTCCCTGTGCATGTGAGAGAAGAAGGCGTGGTGCTAGAGGCTGTGGCGT
GG
CTAGCAGGGGGCACTGTGTACCGGGGAGAAACGGCCTCCCTGCTATGCAACATATCTGTGCGGGGCGG
C
CCCCCAGGGCTGCGACTAGCAGCCAGCTGGTGGGTGGAGAGGCCAGAGGAGGGCGAGCTGAGCACTGGC
CCT
GCTCAGCTTGTGGGTGGAGTGGGTCAGGACGGTGTGGCAGAGCTGGGAGTCCGGCCTGGAGGGGGTC
CT
GTCAGTGTGGAGCTGGTGGGACCCAGAAGTCATCGGCTAAGACTGCACGGCTTGGGGCCTGAGGATGA
A
GGCATATACCACTGTGCCCCAAGTGCCTGGGTGCAGCATGCGGACTACAGCTGGTACCAGGCAGGCAGT
GCG
CGCTCCGGGCCTGTCACAGTCTACCCCTACACGCATGCTGTGGATACCCTATTTGTGCCCCTGTTGG
TG
GGTACAGGAGTCGCCCTAGTTACCGGCGCCAGCGTCCTGGCTACCATCACCTGCTGCTTTATGAAGAG
G
ATGCGGAAGCGGTGA


Translation (611 aa):
MGVPSPTPLSSLLLLLLILGTRCYARQVHVPRGPLYRVAGTAVSISCNVSDYEGPAQQDFEWFMYRPEAP
A
TSLGIVSTKDSQFSYAVFGPRVASGDLQVQRLKGDSVVLKIARLQAQDSGFYECYTPSTDTQYLGNYSA
K
VELR
VLPDELQVSAAPPGPRGRQAATSPSRLTVHEGQELALGCLAQTKTKKHTHLSVSFGRAIPEAPVG
R
ATLQEVVGLHSDMAVEAGAPYAERLASGELRLSKEGTDRYRMVVGGAQAGDSGTYHCTAAEWIQDPDGS
W
VQVAEKRAVLAHVDVQTL
SSQLAVTVGPGERRIGPGEPLELLCNVSGALPPPGRHAAYSVGWEMAPAGA
P
GPGRLVAQLDTEGIGSLGPGYEDRHIAMEKVASRTYRLRLEAARPADAGTYRCLAKAYVRGSGTRLREA
A
SARSRPLPVHVREE
GVVLEAVAWLAGGTVYRGETASLLCNISVRGGPPGLRLAASWWVERPEEGELSTG
P
AQLVGGVGQDGVAELGVRPGGGPVSVELVGPRSHRLRLHGLGPEDEGIYHCAPSAWVQHADYSWYQAGS
A
RSGPVTVYPYTH
AVDTLFVPLLVGTGVALVTGASVLATITCCFMKRMRKR



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser