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Report for CCDS15497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15497.1 Public Mus musculus 1 Alyref2 23 108 98 CCDS HistoryNCBI Gene:56009Re-query CCDS DB by CCDS ID:15497.1Re-query CCDS DB by GeneID:56009See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000081527.1 ENSMUSP00000080242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081527.1Link to Ensembl Protein Viewer:ENSMUSP00000080242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081527Re-query CCDS DB by Protein ID:ENSMUSP00000080242
Original member Current member NCBI NM_019484.4 NP_062357.3 Accepted alive Link to Nucleotide Sequence:NM_019484.4Link to Protein Sequence:NP_062357.3Re-query CCDS DB by Nucleotide ID:NM_019484Re-query CCDS DB by Protein ID:NP_062357Link to BLAST:NP_062357.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062357.3 218 Q9JJW6-1 218 99.0826% 0 2

Chromosomal Locations for CCDS 15497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171503657 171504313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGCCGACAAGATGGACATGTCTTTGGACGACATCATTAAGCTGAACCGTAACCAGCGCCGGGTGAATC
GA
GGCGGCGGGCCTAGGAGGAACCGGCCCGCCATCGCCCGCGGCGGCAGGAACCGGCCGGCACCGTACAG
T
AGACCGAAACCACTTCCGGACAAGTGGCAGCACGACCTATTCGACAGCGGCTGCGGGGGTGGGGAAGGC
GTG
GAGACCGGTGCCAAGCTGCTCGTGTCAAACCTGGACTTCGGGGTGTCAGATGCTGACATTCAGGAAC
TC
TTTGCTGAATTTGGAACGTTGAAAAAAGCCGCTGTGGACTACGATCGCTCTGGACGAAGTTTAGGGAC
G
GCGGATGTACACTTTGAACGGAGGGCAGATGCCCTGAAGGCTATGAAGCAGTACAAGGGCGTCCCTTTG
GAT
GGCCGCCCTATGGACATCCAGCTTGTCACGTCACAGATCGATCCACAGCGAAGACCTGCACAAAGCG
GA
AACAGAGGCGGCATGACAAGGAGCCGTGGCTCTGGAGGCTTTGGTGGCCGCGGCAGCCAGGGAAGGGG
T
AGAGGCACTGGCAGGAACTCAAAGCAGCAGCAGCTTTCTGCAGAGGAGTTGGACGCACAGCTGGATGCT
TAC
AATGCAAGGAGGGACACCAGCTAA


Translation (218 aa):
MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARGGRNRPAPYSRPKPLPDKWQHDLFDSGCGGGEG
V
ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL
D
GRPMDIQLVTSQIDPQRRPAQSGNRGGMTRSRGSGGFGGRGSQGRGRGTGRNSKQQQLSAEELDAQLDA
Y
NARRDTS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser