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Report for CCDS15419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15419.1 Public Mus musculus 1 Pigc 23 108 98 CCDS HistoryNCBI Gene:67292Re-query CCDS DB by CCDS ID:15419.1Re-query CCDS DB by GeneID:67292See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028021.6 ENSMUSP00000028021.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028021.6Link to Ensembl Protein Viewer:ENSMUSP00000028021.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028021Re-query CCDS DB by Protein ID:ENSMUSP00000028021
Original member Current member EBI ENSMUST00000111594.2 ENSMUSP00000107221.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111594.2Link to Ensembl Protein Viewer:ENSMUSP00000107221.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111594Re-query CCDS DB by Protein ID:ENSMUSP00000107221
Original member Current member EBI ENSMUST00000193784.1 ENSMUSP00000141646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193784.1Link to Ensembl Protein Viewer:ENSMUSP00000141646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193784Re-query CCDS DB by Protein ID:ENSMUSP00000141646
Original member Current member NCBI NM_001039045.1 NP_001034134.1 Accepted alive Link to Nucleotide Sequence:NM_001039045.1Link to Protein Sequence:NP_001034134.1Re-query CCDS DB by Nucleotide ID:NM_001039045Re-query CCDS DB by Protein ID:NP_001034134Link to BLAST:NP_001034134.1
Original member Current member NCBI NM_026078.2 NP_080354.1 Accepted alive Link to Nucleotide Sequence:NM_026078.2Link to Protein Sequence:NP_080354.1Re-query CCDS DB by Nucleotide ID:NM_026078Re-query CCDS DB by Protein ID:NP_080354Link to BLAST:NP_080354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034134.1 297 Q9CXR4 297 100% 0 0
NP_080354.1 297 Q9CXR4 297 100% 0 0

Chromosomal Locations for CCDS 15419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161970451 161971344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGTGTGCTCAACGTGTAACAGACACCCCAGAAGTCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCGT
TC
CCTGATAACTATGTTGACCAGAGGTTCCTGGAAGAACTCCGGAAAAACATCTATGCCCGGAAGTACCA
G
TACTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATACAGCAGCTGTGCAGTGTCTGTGTTTTTGTAGTG
ATC
TGGTGGTACATGGATGAGGGTCTTCTGGCTCCCCAGTGGCTTTTTGGGACCGGACTGGCATCTTCCT
TG
GTTGGGTATGTTTTATTCGATCTTATCGATGGAGGTGATGGACGGAAGAAGAGTGGGCGGACCCGGTG
G
GCCGACCTGAAGAGTACTCTGGTCTTTATCACTTTCACTTACGGTTTTTCACCTGTGCTAAAGACCCTG
ACG
GAGTCTGTCAGTACAGACACTATCTACGCCATGGCAGTCTTTATGCTGTTAGGCCATCTCATCTTCT
TT
GATTACGGTGCCAATGCTGCTATTGTATCCAGCACCCTGTCCTTGAACATGGCCATCTTTGCTTCTGT
T
TGCCTGGCCTCACGCCTCCCCCGGTCACTCCACGCCTTCATTATGGTGACGTTTGCTATCCAGATCTTT
GCA
CTGTGGCCCATGTTACAGAAGAAACTGAAGGCGTACACCCCGCGAAGCTATGTAGGGGTCACTTTGC
TT
TTTGCCTTTTCTGCCTTTGGAGGTCTTCTGTCCATTAGTGCTGTGGGAGCCATACTCTTTGCTCTCCT
G
CTGTTTTCCATCTCCTGTCTCTGCCCTTACTACCTCATTCATCTGCAGCTTTTTAAGGAAAATATTCAC
GGG
CCTTGGGATGAAGCTGAAATCAAGGAAGACTTGTCTAGGTTCCTTAGCTAA


Translation (297 aa):
MCAQRVTDTPEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVV
I
WWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVFITFTYGFSPVLKTL
T
ESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIF
A
LWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIH
G
PWDEAEIKEDLSRFLS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser