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Report for CCDS15273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15273.1 Public Mus musculus 1 Slc26a9 23 108 98 CCDS HistoryNCBI Gene:320718Re-query CCDS DB by CCDS ID:15273.1Re-query CCDS DB by GeneID:320718See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049027.9 ENSMUSP00000036916.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049027.9Link to Ensembl Protein Viewer:ENSMUSP00000036916.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049027Re-query CCDS DB by Protein ID:ENSMUSP00000036916
Original member Current member NCBI NM_177243.4 NP_796217.2 Accepted alive Link to Nucleotide Sequence:NM_177243.4Link to Protein Sequence:NP_796217.2Re-query CCDS DB by Nucleotide ID:NM_177243Re-query CCDS DB by Protein ID:NP_796217Link to BLAST:NP_796217.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796217.2 790 Q8BU91 790 99.7468% 0 2

Chromosomal Locations for CCDS 15273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131750598 131750722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131752844 131752983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131753120 131753230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131753827 131754002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131755372 131755536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131756189 131756341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131756637 131756719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131757388 131757535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131758471 131758584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131758759 131758836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131759398 131759493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131761706 131761812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131762756 131762825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131762915 131763007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131763145 131763258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131763794 131764075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131764987 131765041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131765884 131766026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131767809 131767880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131769201 131769248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGAACCAGCCCAGGCCCCGCTACGTGGTAGACAGAGCTGCGTACTCCCTCTCCCTCTTCGATGATGAGT
TTGAGAAGAAGGACCGTGCCTACCCGGTGGGAGAGAAGCTTCGCAACACTTTCAGGTGCTCCTCAGCCAA
GTTCAAAGCCTTTGTGTTTGGGCTGTTGCCTGTGCTCTCCTGGCTCCCTAAATACAAGATCAAAGACTAC
ATCATCCCTGACTTGCTGGGTGGACTCAGTGGAGGGTGTATCCAGGTGCCACAAGGCATGGCATTTGCAT
TGCTGGCCAACCTTCCTGCTGTCAACGGTCTCTACTCCTCCTTCTTCCCCCTCCTGACCTATTTCTTCTT
AGGGGGTATTCACCAGATGGTGCCAGGTACCTTTGCCGTTATCAGCATCCTGGTGGGTAACATCTGTCTG
CAGCTGGCCCCAGAGTCGAAATTCCAGATCTTCAACAATGTCACCAATGAGACCTACGTGGACACAGCAG
CCATGGAGGCAGAAAGACTGCATGTGTCTGCGACACTTGCCTGCCTGACTGCTGTCATCCAGATGGCCTT
GGGCTTCATGCAGTTTGGCTTTGTTGCCATCTACCTCTCTGAGTCCTTTATCCGGGGCTTCATGACAGCC
GCTGGCCTGCAGATTCTCATCTCTGTGCTCAAGTACATCTTTGGTCTGACCATTCCCTCCTATACAGGCC
CTGGCTCCATCGTCTTTACCTTCATTGACATTTGCAAAAACCTCCCCCACACCAACATCGCCTCGCTCAT
CTTTGCCCTGGTCAGCGGTGTCTTCCTGGTGCTGGTGAAGGAACTCAACGCTCGGTACATGCACAAGATC
CACTTCCCCATCCCTACAGAGATGATTGTGGTGGTAGTTGCAACCGCTATCTCTGGGAGCTGCAAGATGC
CAAAAAAATACCACATGCAGATTGTGGGGGAGATCCGACAAGGGTTTCCCACTCCGGTGGCACCGATGGT
TTCGCAGTGGAAGGACATGGTGGGCACAGCCTTCTCCCTGGCAATTGTGGGCTATGTCATCAATCTGGCT
ATGGGCCGCACCCTGGCCAGCAAGCATGGCTATGATGTGGATTCTAACCAGGAGATGATTGCCCTGGGCT
GTAGCAACTTCTTCGGCTCCTTTTTCAAGATCCACGTCATTTGCTGCGCTCTCTCAGTCACACTGGCTGT
GGATGGGGCTGGAGGGAAATCCCAGGTGGCCAGCTTGTGTGTGTCTCTGGTGGTGATGATCACCATGCTG
GTCCTGGGATCCTATCTGTACCCTCTCCCCAAGGCTGTGCTAGGTGCCCTGATCGCTGTCAATCTCAAGA
ACTCCCTGAAGCAGCTCACTGACCCCTACTACCTCTGGAGGAAGAGTAAGCTAGACTGTTGTGTCTGGGT
GGTGAGCTTCCTCTCCTCGTTCTTCCTGAGCCTGCCCTACGGTGTCGCAGTGGGTGTAGCCTTCTCCATC
CTGGTTGTGATCTTCCAGACCCAGTTTCGAAATGGCTCCACACTGGCCCAGGTCATGGACACGGACATCT
ATGTGAACCCCAAGACCTACAACAGGGCCCAGGAAATTGCGGGAGTTAAGATTGTCACTTACTGCTCCCC
TCTCTACTTTGCCAACTCAGAGATCTTCAGGCAAAAAGTCATTGCCAAGACAGGTATGGACCCCCAGAAA
GTATTACTCGCCAAGCAGAAATATCTCCGGAAGCAGGAGAAGAGGACGGCGATACCCACACAGCAGAGAA
AGTCCCTCTTCATGAAAACCAAGACGGTCTCTCTACAGGAACTCCAACAGGACTTTGAAAGTGCTCCCTC
TACTGACCCCAACAACAACCAAGCTCCTGCGGCTGAGGCTCACATATCCTACATCACCTTCAGTCCAGAC
GCCTCCACAGCTGCTGCATGTGAGCTGCCCGCCTCCACTCGGTCCCCCCAGGAGGCTAGTGACACTCTAG
CCAGTGTGCCGCCCTTTGTCACCTTCCACACTCTCATCCTTGACATGAGTGGAGTCAGCTTTGTGGATTT
GATGGGCATCAAAGCTCTCGCCAAGCTAAGCTCCACCTATGAGAAGATCGGAGTCCAGATCTTTCTGGTA
AACATCCACGCCCAGGTGTATAATGACATCAGCCACGGAGGTGTCTTTGAAGATGGGTGTGTACAGCGCA
GTCACGTGTTCCCCAGCATCCACGATGCAGTCCTCTTTGCCCAAGCAAATGCTAGAGAAGCCCCAGACCG
CAACTTCCATGGGGCTCCAGGGGATACTGAGTTCTCCTTGTATGACTCAGAAGAGGAAGGTCCCAGCTAT
TGGGACTTAGAACAGGAGATGTTCGGGACCATGTTTCACACAGAGACCCTGACTGCCCTGTGA

Translation (790 aa):
MNQPRPRYVVDRAAYSLSLFDDEFEKKDRAYPVGEKLRNTFRCSSAKFKAFVFGLLPVLSWLPKYKIKDY
IIPDLLGGLSGGCIQVPQGMAFALLANLPAVNGLYSSFFPLLTYFFLGGIHQMVPGTFAVISILVGNICL
QLAPESKFQIFNNVTNETYVDTAAMEAERLHVSATLACLTAVIQMALGFMQFGFVAIYLSESFIRGFMTA
AGLQILISVLKYIFGLTIPSYTGPGSIVFTFIDICKNLPHTNIASLIFALVSGVFLVLVKELNARYMHKI
HFPIPTEMIVVVVATAISGSCKMPKKYHMQIVGEIRQGFPTPVAPMVSQWKDMVGTAFSLAIVGYVINLA
MGRTLASKHGYDVDSNQEMIALGCSNFFGSFFKIHVICCALSVTLAVDGAGGKSQVASLCVSLVVMITML
VLGSYLYPLPKAVLGALIAVNLKNSLKQLTDPYYLWRKSKLDCCVWVVSFLSSFFLSLPYGVAVGVAFSI
LVVIFQTQFRNGSTLAQVMDTDIYVNPKTYNRAQEIAGVKIVTYCSPLYFANSEIFRQKVIAKTGMDPQK
VLLAKQKYLRKQEKRTAIPTQQRKSLFMKTKTVSLQELQQDFESAPSTDPNNNQAPAAEAHISYITFSPD
ASTAAACELPASTRSPQEASDTLASVPPFVTFHTLILDMSGVSFVDLMGIKALAKLSSTYEKIGVQIFLV
NIHAQVYNDISHGGVFEDGCVQRSHVFPSIHDAVLFAQANAREAPDRNFHGAPGDTEFSLYDSEEEGPSY
WDLEQEMFGTMFHTETLTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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