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Report for CCDS15251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15251.1 Public Mus musculus 1 Ubxn4 23 108 98 CCDS HistoryNCBI Gene:67812Re-query CCDS DB by CCDS ID:15251.1Re-query CCDS DB by GeneID:67812See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027592.5 ENSMUSP00000027592.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027592.5Link to Ensembl Protein Viewer:ENSMUSP00000027592.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027592Re-query CCDS DB by Protein ID:ENSMUSP00000027592
Original member Current member NCBI NM_026390.3 NP_080666.2 Accepted alive Link to Nucleotide Sequence:NM_026390.3Link to Protein Sequence:NP_080666.2Re-query CCDS DB by Nucleotide ID:NM_026390Re-query CCDS DB by Protein ID:NP_080666Link to BLAST:NP_080666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080666.2 506 Q8VCH8 506 99.8024% 0 1

Chromosomal Locations for CCDS 15251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 128244471 128244552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128252203 128252305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128255433 128255461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128256119 128256237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128258832 128259003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128259444 128259537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128260834 128260888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128262793 128262957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128266290 128266414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128269869 128269971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128272821 128272952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128274802 128275004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128276957 128277095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGCTGTGGTTCCAGGGCGCCATCCCGGCGGCCATCGCGTCTGCTAAGAGGAGCGGCGCGGTCTTCGTGG
TGTTCGTGGCAGGGGATGATGAGCAATCTATACAAATGGCTGCAAGTTGGGAAGATGAAAAAGTGACACA
AGCATCATCAAACAACTTTGTTGCTATTAAAATTGATACTAAAAGTGAAGCCTGTCTGCAGTTTTCACAA
ATTTATCCTGTAGTATGTGTTCCATCCAGTTTCTTTATAGGAGACAGTGGAATCCCTTTGGAAGTAATAG
CGGGGAGTGTTTCTGCAGATGAGCTTGTTACAAGAATTCATAAAGTCCAACAGATGCACTCGTCAAAAGG
TGAAGCATCAGTGACAAATGACAACCAGTCAGAAAGTTCAGTATCTACCCCATCTGCCTCATTTGAACCT
GATGTATGTGAAAATCCCGAGTCCAAAAATACAGAGCTTTGTGAGACACCAGCTACCTCTGACACAAAGT
CAGATACTGCAACAGGAGGAGAATGCACAGGTCATGACAGCCACTCTCAGGAGCCTCATGGATGTTCAAA
CCAGAGACCAGCCGAGGACCTCACCGTCAGAGTAGAAAGACTAACAAAAAAACTTGAAGAAAGGAGAGAA
GAGAAGCGGAAGGAAGAAGCACAGAGAGAGATTAAGAAGGAAATTGAAAGGAGAAAAACTGGAAAGGAAA
TGTTGGATTATAAAAGAAAACAAGAAGAAGAATTAACAAAAAGAATGTTAGAAGAAAGAAGCAGAGAGAA
GGCAGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCT
CGTTTTGCAAAGACAAAGGAAGCAGAAGCTGCCAAAGCTGCTGCCTTGCTGACCAAACAGGCAGGAACGG
AAGTCAAGAGAGAGTCTACAGCACGAGACAGAAGCACCATTGCAAGAATTCAGTTCCGGCTGCCTGATGG
TTCTTCCTTTACAAACCAGTTTCCTTCTGATGCTCCTCTAGAAGAAGCGAGGCAGTTTGCTGCACAGACC
GTGGGCAACACCTATGGCAATTTTTCATTAGCCACCATGTTTCCCAGAAGAGAGTTCACCAGAGAAGACT
ATAAGAGGAGGCTGCTGGATCTGGAGCTCGCCCCCAGCGCCTCTGTGGTGCTGCTGCCAGCAGGACGGCC
AGCCACATCCATTGTCCACTCTTCTAGTGGAGACATTTGGACATTACTGGGGACGGTGCTTTATCCATTC
CTGGCCATATGGAGATTAATTAGCAATTTTTTATTTAGCAATCCTCCTCCTGCACAGACTTCAGCAAGAG
CCACATCCACAGAGCCTTCAAACTCTGCATCATCCAGCAAATCAGAGAAAAGGGAACCAGTCCGAAAAAG
AATGCTGGAAAAACGAGGGGAAGACTTTAAAAAAGAAGGGAAAATATACAGACTGAGGACTCAAGATGAC
GGTGAAGACGAGAACAACACTTGGAATGGAAACTCCACGCAGCAGATGTAG

Translation (506 aa):
MLWFQGAIPAAIASAKRSGAVFVVFVAGDDEQSIQMAASWEDEKVTQASSNNFVAIKIDTKSEACLQFSQ
IYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHKVQQMHSSKGEASVTNDNQSESSVSTPSASFEP
DVCENPESKNTELCETPATSDTKSDTATGGECTGHDSHSQEPHGCSNQRPAEDLTVRVERLTKKLEERRE
EKRKEEAQREIKKEIERRKTGKEMLDYKRKQEEELTKRMLEERSREKAEDRAARERIKQQIALDRAERAA
RFAKTKEAEAAKAAALLTKQAGTEVKRESTARDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQT
VGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAGRPATSIVHSSSGDIWTLLGTVLYPF
LAIWRLISNFLFSNPPPAQTSARATSTEPSNSASSSKSEKREPVRKRMLEKRGEDFKKEGKIYRLRTQDD
GEDENNTWNGNSTQQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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