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Report for CCDS14996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14996.1 Public Mus musculus 1 Ndufs1 23 108 98 CCDS HistoryNCBI Gene:227197Re-query CCDS DB by CCDS ID:14996.1Re-query CCDS DB by GeneID:227197See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027111.14 ENSMUSP00000027111.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027111.14Link to Ensembl Protein Viewer:ENSMUSP00000027111.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027111Re-query CCDS DB by Protein ID:ENSMUSP00000027111
Original member Current member EBI ENSMUST00000168099.8 ENSMUSP00000126621.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168099.8Link to Ensembl Protein Viewer:ENSMUSP00000126621.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168099Re-query CCDS DB by Protein ID:ENSMUSP00000126621
Original member Current member NCBI NM_001160038.1 NP_001153510.1 Accepted alive Link to Nucleotide Sequence:NM_001160038.1Link to Protein Sequence:NP_001153510.1Re-query CCDS DB by Nucleotide ID:NM_001160038Re-query CCDS DB by Protein ID:NP_001153510Link to BLAST:NP_001153510.1
Original member Current member NCBI NM_001160039.1 NP_001153511.1 Accepted alive Link to Nucleotide Sequence:NM_001160039.1Link to Protein Sequence:NP_001153511.1Re-query CCDS DB by Nucleotide ID:NM_001160039Re-query CCDS DB by Protein ID:NP_001153511Link to BLAST:NP_001153511.1
Original member Current member NCBI NM_001160040.1 NP_001153512.1 Accepted alive Link to Nucleotide Sequence:NM_001160040.1Link to Protein Sequence:NP_001153512.1Re-query CCDS DB by Nucleotide ID:NM_001160040Re-query CCDS DB by Protein ID:NP_001153512Link to BLAST:NP_001153512.1
Original member Current member NCBI NM_145518.2 NP_663493.2 Accepted alive Link to Nucleotide Sequence:NM_145518.2Link to Protein Sequence:NP_663493.2Re-query CCDS DB by Nucleotide ID:NM_145518Re-query CCDS DB by Protein ID:NP_663493Link to BLAST:NP_663493.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153510.1 727 Q91VD9 727 100% 0 0
NP_001153511.1 727 Q91VD9 727 100% 0 0
NP_001153512.1 727 Q91VD9 727 100% 0 0
NP_663493.2 727 Q91VD9 727 100% 0 0

Chromosomal Locations for CCDS 14996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 63143831 63143922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63147120 63147192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63147290 63147424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63148396 63148571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63149957 63150111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63151551 63151711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63152775 63152904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63156204 63156332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63157132 63157277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63159750 63159864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63160880 63161014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63163667 63163852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63164730 63164860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63164949 63165030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63166291 63166367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63169229 63169336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63170050 63170141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63170849 63170909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGTTAAGGATACCTATAAAAAGGGCCTTGATAGGCCTTTCTAATTCTCCTAAAGGATATGTTCGCACAA
CTGGCACAGCAGCAAGTAACTTGATTGAAGTATTTGTTGATGGTCAGTCTGTCATGGTGGAACCAGGAAC
CACTGTTCTGCAGGCTTGCGAGAAGGTCGGCATGCAAATCCCTCGATTCTGTTACCATGAAAGGTTGTCT
GTTGCTGGAAATTGCAGGATGTGCCTGGTAGAGATTGAGAAAGCTCCAAAGGTTGTCGCTGCTTGTGCTA
TGCCTGTAATGAAGGGCTGGAATATCTTGACAAACTCGGAAAAATCTAAGAAAGCCAGAGAAGGTGTGAT
GGAGTTCTTATTAGCAAATCACCCATTGGATTGTCCTATTTGTGACCAGGGAGGTGAATGTGATCTGCAG
GACCAGTCCATGATGTTTGGAAGTGATAGGAGCCGATTTCTAGAGGGGAAGCGTGCTGTGGAGGACAAGA
ACATTGGGCCCCTAGTAAAGACCATCATGACTAGATGCATCCAGTGTACCCGGTGCATCAGGTTTGCAAG
TGAGATTGCAGGAGTAGATGATTTGGGAACAACAGGAAGAGGAAATGACATGCAAGTTGGCACATACATT
GAAAAAATGTTTATGTCTGAACTGTCTGGGAATGTCATTGATATCTGCCCTGTAGGGGCCCTAACCTCTA
AGCCTTATGCCTTTACTGCCCGGCCTTGGGAAACAAGAAAGACAGAGTCCATTGATGTAATGGATGCAGT
GGGAAGTAACATTGTGGTTAGCACAAGAACTGGAGAGGTAATGAGGATTTTGCCAAGAATGCATGAAGAT
ATTAATGAAGAATGGATCTCTGATAAAACCAGGTTTGCTTATGATGGACTAAAACGTCAAAGACTTACTG
AACCAATGGTCAGAAACGAAAAAGGGCTTTTAACTTATACCTCCTGGGAAGATGCACTCTCTCGTGTAGC
TGGAATGTTACAGAATTTTGAAGGCAATGCTGTGGCAGCGATTGCAGGAGGCTTGGTGGATGCTGAAGCC
TTAGTAGCTCTGAAAGACTTGCTTAATAAAGTTGACTCTGACAACTTATGCACTGAAGAGATCTTCCCCA
CTGAAGGAGCTGGTACAGACTTACGTTCCAATTATCTTCTCAATACCACAATTGCTGGTGTGGAAGAAGC
AGATGTTGTTCTTCTAGTTGGTACAAATCCACGTTTTGAGGCACCGCTGTTTAATGCTAGAATTAGAAAG
AGCTGGCTTCATAATGACTTAAAAGTGGCCCTCATCGGTAGTCCAGTGGACCTCACTTACAGATACGACC
ATCTAGGAGACTCTCCTAAAATTCTGCAAGACATTGCTTCAGGGAGGCATTCATTCTGCGAGGTCTTAAA
GGATGCTAAAAAACCAATGGTGGTTTTAGGCAGTTCTGCACTCCAGAGAGATGATGGAGCAGCAATTCTT
GTAGCTGTGTCCAACATGGTACAAAAGATTCGAGTGACAACCGGTGTTGCTGCAGAGTGGAAAGTTATGA
ATATTCTGCATAGGATTGCAAGCCAGGTAGCTGCTTTGGACCTTGGCTATAAACCTGGGGTAGAAGCGAT
TAGGAAGAACCCTCCCAAAATGCTGTTTCTTCTGGGAGCAGATGGAGGTTGTATCACGCGACAGGACTTG
CCAAAGGATTGTTTCATTGTTTATCAAGGACACCATGGTGATGTTGGTGCTCCCATGGCTGATGTTATTC
TCCCAGGGGCTGCTTACACAGAAAAGTCTGCTACTTATGTCAATACTGAGGGCAGAGCTCAGCAAACCAA
AGTAGCAGTGACGCCTCCTGGCTTGGCACGAGAAGACTGGAAAATCATAAGAGCTCTCTCTGAGATTGCA
GGTATCACTCTTCCATATGACACTCTGGATCAAGTAAGGAACCGTCTTGAAGAGGTCTCTCCTAATCTGG
TTCGATATGATGATATTGAAGAAACTAATTACTTTCAGCAAGCAAGTGAGCTTGCCAAGCTAGTAAACCA
GGAGGTTCTTGCTGACCCACTCGTTCCACCTCAGCTAACTATAAAAGACTTCTATATGACAGACTCCATT
AGCAGAGCCTCACAGACAATGGCCAAGTGTGTCAAAGCTGTCACCGAGGGCGCTCAGGCAGTAGAGGAGC
CGTCCATATGCTGA

Translation (727 aa):
MLRIPIKRALIGLSNSPKGYVRTTGTAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLS
VAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQ
DQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYI
EKMFMSELSGNVIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHED
INEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQNFEGNAVAAIAGGLVDAEA
LVALKDLLNKVDSDNLCTEEIFPTEGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRK
SWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGRHSFCEVLKDAKKPMVVLGSSALQRDDGAAIL
VAVSNMVQKIRVTTGVAAEWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKMLFLLGADGGCITRQDL
PKDCFIVYQGHHGDVGAPMADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIA
GITLPYDTLDQVRNRLEEVSPNLVRYDDIEETNYFQQASELAKLVNQEVLADPLVPPQLTIKDFYMTDSI
SRASQTMAKCVKAVTEGAQAVEEPSIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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