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Report for CCDS14936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14936.1 Public Mus musculus 1 Slc39a10 23 108 98 CCDS HistoryNCBI Gene:227059Re-query CCDS DB by CCDS ID:14936.1Re-query CCDS DB by GeneID:227059See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027131.5 ENSMUSP00000027131.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027131.5Link to Ensembl Protein Viewer:ENSMUSP00000027131.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027131Re-query CCDS DB by Protein ID:ENSMUSP00000027131
Original member Current member NCBI NM_001356416.1 NP_001343345.1 Accepted alive Link to Nucleotide Sequence:NM_001356416.1Link to Protein Sequence:NP_001343345.1Re-query CCDS DB by Nucleotide ID:NM_001356416Re-query CCDS DB by Protein ID:NP_001343345Link to BLAST:NP_001343345.1
Original member Current member NCBI NM_001356417.1 NP_001343346.1 Accepted alive Link to Nucleotide Sequence:NM_001356417.1Link to Protein Sequence:NP_001343346.1Re-query CCDS DB by Nucleotide ID:NM_001356417Re-query CCDS DB by Protein ID:NP_001343346Link to BLAST:NP_001343346.1
Original member Current member NCBI NM_172653.3 NP_766241.2 Accepted alive Link to Nucleotide Sequence:NM_172653.3Link to Protein Sequence:NP_766241.2Re-query CCDS DB by Nucleotide ID:NM_172653Re-query CCDS DB by Protein ID:NP_766241Link to BLAST:NP_766241.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343345.1 833 Q6P5F6 833 100% 0 0
NP_001343346.1 833 Q6P5F6 833 100% 0 0
NP_766241.2 833 Q6P5F6 833 100% 0 0

Chromosomal Locations for CCDS 14936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46809953 46810111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46811986 46812176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46818063 46818143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46819065 46819433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46820523 46820643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46826093 46826281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46827343 46827512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46832556 46832763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46835127 46836140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGAAGGTGCATATACACACAAAGTTTTGCCTCATCTGTTTACTGACATTTATTTTCCATCATTGCAACC
ACTGCCATGAAGACCATGACCATGGCCCTGAGGAGCTTCACAGACATCATCGTGGGATGACAGAGTCAGA
GTCAAGCAAATTTTCAGTGCAGGATGCTGAAAATGAAAAAAAGTACTATATTGAAAAACTTTTTGACCGT
TATGGTGAAAATGGAAGATTATCATTTTTTGGTCTGGAGAAACTTTTAACAAACTTGGGCCTTGGAGAGA
TCAAAGTCGTTGAGATTAATCACGAGGACCTTGGCCATGATCATGTTTCTCACTTAGACATTCTGGCAGT
GCAAGAGGGAAAGCATTTCCATTCGCATACCCACCAGCATTTTCACAATCATTTAAATGCAGAAAATCAT
ACTACAACCAGTGTGACATCAAAAAGAAACCACAAATGTGATCCAGAGAAAGAGGCAGCTGAACTGCCCA
TCAAAGCTGATGATAAACACCTGCATGACCGCAATCACCGCTTCCATCATCGCCATCGTTTGCATCATCA
CCTGGATCACAACACTACTCGTCACGTTCATAATGACTCCGTTGCTCACAGTGAGCATGGGGAGCCCGGT
CACAGCCCTTCACCAGAGACCAATAAAACACAAGAGCAGTCTGAAGTGAAGTCAGTGAAGGTCAGGAGGA
AAGAAAAAGGGAAGAGGAAGAAAGAAAACTCGGAGGTTAATACACCAGGTTTCCTCCCCAACCATGATCA
CAGTGAACAATATGAGCATAACCGGGTTCACAAACTTGACCGTGTACATAGCCCTGGCCATCCTCATGCG
CATCTTCCTGAGCACAGTGGTCATGAGCTTGGCCATGGACACCAAGAACTTGATCCTGATAATGAAGGTG
AACTTCGACATACTAGAAAGCGAGAAGCACCACATGTTAGAAAAAGTGCAATTTATTCCACCCCTAGCCA
CAAAGACCAGAGTGAAGACGACCGCCAGCATGAATGTTTGAACGTCACTCAGTTGTTAAAACACTTTGGT
CTTGGTCCGAACTCTCCCATCTCACCGGATCTATTCACGTACCTTTGCCCTGCATTGCTGTATCAGATCG
ACAGCAGACTTTGTATTGAACATTTTGACAAACTTTTAGTTGAAGATTTAAATAAGGATAAAACTCTGGT
TCCTGAAGATAAGACAAATATAGGGGCATCGGCGTGGATCTGTGGCATCATATCTATCACCGTCATTAGT
CTGCTTTCCTTGCTGGGTGTGATTTTGGTTCCCATCATCAACCAAGGATGCTTCAAATTCCTTCTCACGT
TCCTTGTTGCACTAGCAGTAGGAACAATGAGTGGAGACGCCCTTCTGCATCTACTGCCCCATTCTCAGGG
TGGACATGACCACAGTCATCAGCATACGCACGGACATGGTCATTCACATGGGCATGAATCTAAGGAGTTT
TTGGAAGAATATGATGCTGTGTTGAAAGGACTTGTGGCGCTAGGAGGCATTTACTTACTGTTCATCATAG
AACACTGCATTCGAATGTTTAAGCACTACAAGCAACAAAGAGGAAAACAGAAATGGTTTATGAAGCAGAG
CACAGAAGAATCCACTATTGGAAGAAAGCTTTCAGATCATAAGTTAAACAGCACACCGGATGCTGACTGG
CTCCAACTCAAGCCCCTTGCTGGAACGGATGACTCGGTAGTCTCTGAAGACCGGCTTAATGAGACTGAAC
TGACGGATTTAGAAGCCCAACAAGAATCCCCTCCTAAAAATTACCTGGGTGTGGAGGAAGAGAAAATCAT
GGACCATTCTCACAGTGATGGACTGCACACCATTCATGAGCACGAGGTCCACGTGACCTCACATAACCAC
CATGATGAGGATAAAGCAGTGCTGAGGAAGCACAGCCACCAGTGGCACCACAGACACGCCCATCATTCTC
ACGGGCCCTGCCACTCCGGCTCAGACCTGAAGGAAACAGGAATAGCCAATATAGCCTGGATGGTGATCAT
GGGTGACGGCATCCACAACTTCAGTGACGGCCTCGCCATTGGGGCAGCTTTCAGCGCGGGGCTGACTGGA
GGCATCAGCACATCCATAGCCGTCTTCTGTCATGAACTGCCACATGAATTAGGTGATTTTGCAGTTCTTC
TAAAAGCAGGCATGACCGTAAAGCAAGCAATTGTGTACAATCTGCTCTCTGCCATGATGGCTTACATAGG
AATGCTCATAGGCACGGCAGTCGGTCAGTATGCCAACAACATCACACTCTGGATCTTCGCAATCACTGCC
GGCATGTTCCTCTATGTGGCCTTGGTGGATATGCTTCCAGAAATGCTGCATGGAGATGGTGACCATGAGG
AGCATGGCTTCTGTCCAGTTGGGCAGTTCATTCTTCAGAATTTAGGACTGCTGTTTGGATTCGCCATCAT
GCTGGTTATTGCCCTCTATGAAGACAAAATTGTGTTTGACATCCAGTTCTGA

Translation (833 aa):
MKVHIHTKFCLICLLTFIFHHCNHCHEDHDHGPEELHRHHRGMTESESSKFSVQDAENEKKYYIEKLFDR
YGENGRLSFFGLEKLLTNLGLGEIKVVEINHEDLGHDHVSHLDILAVQEGKHFHSHTHQHFHNHLNAENH
TTTSVTSKRNHKCDPEKEAAELPIKADDKHLHDRNHRFHHRHRLHHHLDHNTTRHVHNDSVAHSEHGEPG
HSPSPETNKTQEQSEVKSVKVRRKEKGKRKKENSEVNTPGFLPNHDHSEQYEHNRVHKLDRVHSPGHPHA
HLPEHSGHELGHGHQELDPDNEGELRHTRKREAPHVRKSAIYSTPSHKDQSEDDRQHECLNVTQLLKHFG
LGPNSPISPDLFTYLCPALLYQIDSRLCIEHFDKLLVEDLNKDKTLVPEDKTNIGASAWICGIISITVIS
LLSLLGVILVPIINQGCFKFLLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHTHGHGHSHGHESKEF
LEEYDAVLKGLVALGGIYLLFIIEHCIRMFKHYKQQRGKQKWFMKQSTEESTIGRKLSDHKLNSTPDADW
LQLKPLAGTDDSVVSEDRLNETELTDLEAQQESPPKNYLGVEEEKIMDHSHSDGLHTIHEHEVHVTSHNH
HDEDKAVLRKHSHQWHHRHAHHSHGPCHSGSDLKETGIANIAWMVIMGDGIHNFSDGLAIGAAFSAGLTG
GISTSIAVFCHELPHELGDFAVLLKAGMTVKQAIVYNLLSAMMAYIGMLIGTAVGQYANNITLWIFAITA
GMFLYVALVDMLPEMLHGDGDHEEHGFCPVGQFILQNLGLLFGFAIMLVIALYEDKIVFDIQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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