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Report for CCDS14879.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14879.2 Public Mus musculus 1 Cnnm4 23 108 98 CCDS HistoryNCBI Gene:94220Re-query CCDS DB by CCDS ID:14879.2Re-query CCDS DB by GeneID:94220See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 14879.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14879.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153128.1 ENSMUSP00000121317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153128.1Link to Ensembl Protein Viewer:ENSMUSP00000121317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153128Re-query CCDS DB by Protein ID:ENSMUSP00000121317
Original member Current member NCBI NM_033570.2 NP_291048.2 Accepted alive Link to Nucleotide Sequence:NM_033570.2Link to Protein Sequence:NP_291048.2Re-query CCDS DB by Nucleotide ID:NM_033570Re-query CCDS DB by Protein ID:NP_291048Link to BLAST:NP_291048.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291048.2 771 Q69ZF7 771 100% 0 0

Chromosomal Locations for CCDS 14879.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36471693 36473085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36497990 36498133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36498395 36498529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36499411 36499580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36499885 36499981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36505601 36505779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36506409 36506606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2316 nt):
ATGGCGCCGGGGGGCGGGGGCGGGCGGCGGGACGGCTGGCCGGCCCGAGGGCGCCTCCTCCTGGCTGCGC
TGCTGCTGCTATGGACGCGGGCGGCCAGCGGCCAGAGCAGCCCCCAGCAGAGCGTGATCCTAGGCATGAG
GCTAGCGAGCTGCAACAAGTCGTGCGGGATGAACCCGGATGGCATCATCTTCGTGTCCGAGGGCAGCACG
GTGAACTTGAGGCTCTATGGCCACAGCCTGGGCGATATCTCCAGCAACCTGATCTCCTTCACCGAGGTGG
ACGACGCCGAGGCGGTCCACAACTCCACCAACTGCCTGGAGCTCACCAAGGACTTAGTGGTCCAGCGGCT
GGTCAACGTGAGCCGCGGGAACACGTCGGGGATGCTAGTGGTGATTACCAAGTTCCTGCGGAGGAGCGAG
AACATGAAGCTGTACGCGCTGTGCACCCGGCCCCGGGCCGACGGGCCCTGGACCAGATGGACGGACAAGG
ACTCCCTGCTCTTCATGGTGGAGGAGCATGGGAGGTTTCTGCCGCTCTGGCTGCACATCCTTCTCGTTAT
GGTGCTGTTGGTGCTGTCGGGCATCTTTTCTGGCCTCAACCTGGGGCTTATGGCCCTGGACCCGATGGAG
CTGCGCATCGTGCAGAACTGTGGAACTGAGAAGGAGAGAAAGTATGCTCGCAAGATAGAGCCCATCAGGC
GCAAGGGCAACTACCTGCTCTGCTCGCTGCTCCTGGGGAACGTGCTAGTCAACACCTCCCTCACCATCCT
TCTAGACAACCTCATCGGGTCTGGCATCATGGCAGTGGCCTCCTCTACCATTGGCATTGTCATCTTTGGG
GAGATCTTACCTCAAGCCCTGTGCTCCCGGCACGGGCTGGCTGTGGGTGCCAACACTATTGTTCTCACCA
AAGTCTTTATGCTCCTCACTTTTCCCTTGAGTTTCCCCATTAGCAAACTCCTGGACTTCGTCTTAGGTCA
GGAGATTCGCACTGTTTACAATCGGGAGAAGCTGATGGAGATGTTGAAGGTGACAGAGCCCTATAATGAC
TTGGTGAAGGAGGAGTTAAATATGATCCAGGGTGCCCTGGAACTAAGGACCAAAACTGTGGAGGATATCA
TGACCCAGCTACACGACTGCTTCATGATCCGCAGTGATGCCATTCTGGACTTCAACACCATGTCGGAGAT
TATGGAGAGTGGCTACACTCGCATTCCTGTGTTTGAAGATGAGCAATCCAATATTGTAGATATCCTGTAT
GTCAAAGACTTGGCTTTTGTTGACCCGGATGACTGCACCCCGCTCAAGACCATCACTCGCTTCTACAACC
ACCCGGTACATTTTGTTTTTCATGACACCAAGCTGGATGCCATGCTAGAGGAATTTAAGAAGGGCAAGTC
CCACCTGGCCATCGTGCAGAAGGTGAACAATGAGGGCGAGGGCGACCCCTTCTACGAGGTGCTGGGCCTG
GTCACTCTGGAGGACGTCATCGAGGAGATCATCAAGTCCGAGATCCTCGATGAGTCGGACATGTACACTG
ATAATCGGACCCGGAAACGGGTGTCCGTGAAAAACAAGCGTGACTTCTCTGCCTTCAAGGACACTGACAA
TGAACTCAAAGTGAAAATCTCACCTCAGCTTCTTCTGGCTGCTCATCGCTTCCTGGCCACAGAGGTGCCC
CAGTTTAGCCCCTCTCTGATGTCAGAGAAGATCCTGCTCCGGCTGCTCAAGTACCCCGACGTCATTCAGG
AGCTCAGGTTCAATGAGCACAACAGGTACTGCGTTCGCCACTACCTGTACACCCGGAACAAGCCGGCCGA
TTGCTTCGTCCTCATCCTGCAGGGGAAGGTGGAGGTAGAAGCAGGCAAGGAGAACATGAAGTTTGAGACG
GGCGCCTTCTCGTACTATGGAACCATGGCACTCTCCGTGGCACCCCCAGACCGGTCCCCAGCCCTCCCAA
CTCCACTCAGCCGCTCAGCTTCCCTCAGTTACCCGGACCGCAACACAGACTTGACATCCACCTCCCTGGC
AGGCAGCAACCAGTTTGGCAGCTGCATTCTGGGCCAGTATGTCTCTGACTTCAGTGTGCGGGCGCTCACG
GACCTGCAGTACATTAAGATCACAAGGCAGCAGTACCAGAATGGGCTGATGGCCTCCCGCATGGACAACA
GCCCCCAGCCTACCTTCGATGGCTGTGCCACCTGCTCAGAGAACTTTATGGAGAGGCCTGAGCTGCCCCC
GGTGGACGAGACCACGACTCTTCTCAATGAACGCAACTCGTTGCTGCACAGAGCCTCCGAAGAGGAAACC
ATCTGA

Translation (771 aa):
MAPGGGGGRRDGWPARGRLLLAALLLLWTRAASGQSSPQQSVILGMRLASCNKSCGMNPDGIIFVSEGST
VNLRLYGHSLGDISSNLISFTEVDDAEAVHNSTNCLELTKDLVVQRLVNVSRGNTSGMLVVITKFLRRSE
NMKLYALCTRPRADGPWTRWTDKDSLLFMVEEHGRFLPLWLHILLVMVLLVLSGIFSGLNLGLMALDPME
LRIVQNCGTEKERKYARKIEPIRRKGNYLLCSLLLGNVLVNTSLTILLDNLIGSGIMAVASSTIGIVIFG
EILPQALCSRHGLAVGANTIVLTKVFMLLTFPLSFPISKLLDFVLGQEIRTVYNREKLMEMLKVTEPYND
LVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILY
VKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQKVNNEGEGDPFYEVLGL
VTLEDVIEEIIKSEILDESDMYTDNRTRKRVSVKNKRDFSAFKDTDNELKVKISPQLLLAAHRFLATEVP
QFSPSLMSEKILLRLLKYPDVIQELRFNEHNRYCVRHYLYTRNKPADCFVLILQGKVEVEAGKENMKFET
GAFSYYGTMALSVAPPDRSPALPTPLSRSASLSYPDRNTDLTSTSLAGSNQFGSCILGQYVSDFSVRALT
DLQYIKITRQQYQNGLMASRMDNSPQPTFDGCATCSENFMERPELPPVDETTTLLNERNSLLHRASEEET
I


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 Genome Browser Links:   Ensembl Genome Browser
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