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Report for CCDS14439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14439.1 Public Homo sapiens X CYSLTR1 24 110 108 CCDS HistoryNCBI Gene:10800Re-query CCDS DB by CCDS ID:14439.1Re-query CCDS DB by GeneID:10800See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373304.4 ENSP00000362401.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373304.4Link to Ensembl Protein Viewer:ENSP00000362401.3Re-query CCDS DB by Nucleotide ID:ENST00000373304Re-query CCDS DB by Protein ID:ENSP00000362401
Original member Current member EBI ENST00000614798.1 ENSP00000478492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614798.1Link to Ensembl Protein Viewer:ENSP00000478492.1Re-query CCDS DB by Nucleotide ID:ENST00000614798Re-query CCDS DB by Protein ID:ENSP00000478492
Original member Current member NCBI NM_001282186.2 NP_001269115.1 Accepted alive Link to Nucleotide Sequence:NM_001282186.2Link to Protein Sequence:NP_001269115.1Re-query CCDS DB by Nucleotide ID:NM_001282186Re-query CCDS DB by Protein ID:NP_001269115Link to BLAST:NP_001269115.1
Original member Current member NCBI NM_001282187.2 NP_001269116.1 Accepted alive Link to Nucleotide Sequence:NM_001282187.2Link to Protein Sequence:NP_001269116.1Re-query CCDS DB by Nucleotide ID:NM_001282187Re-query CCDS DB by Protein ID:NP_001269116Link to BLAST:NP_001269116.1
Original member Current member NCBI NM_001282188.2 NP_001269117.1 Accepted alive Link to Nucleotide Sequence:NM_001282188.2Link to Protein Sequence:NP_001269117.1Re-query CCDS DB by Nucleotide ID:NM_001282188Re-query CCDS DB by Protein ID:NP_001269117Link to BLAST:NP_001269117.1
Original member Current member NCBI NM_006639.4 NP_006630.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006639.4Link to Protein Sequence:NP_006630.1Re-query CCDS DB by Nucleotide ID:NM_006639Re-query CCDS DB by Protein ID:NP_006630Link to BLAST:NP_006630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269115.1 337 Q9Y271 337 100% 0 0
NP_001269116.1 337 Q9Y271 337 100% 0 0
NP_001269117.1 337 Q9Y271 337 100% 0 0
NP_006630.1 337 Q9Y271 337 100% 0 0

Chromosomal Locations for CCDS 14439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78272733 78273746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGATGAAACAGGAAATCTGACAGTATCTTCTGCCACATGCCATGACACTATTGATGACTTCCGCAATC
AAGTGTATTCCACCTTGTACTCTATGATCTCTGTTGTAGGCTTCTTTGGCAATGGCTTTGTGCTCTATGT
CCTCATAAAAACCTATCACAAGAAGTCAGCCTTCCAAGTATACATGATTAATTTAGCAGTAGCAGATCTA
CTTTGTGTGTGCACACTGCCTCTCCGTGTGGTCTATTATGTTCACAAAGGCATTTGGCTCTTTGGTGACT
TCTTGTGCCGCCTCAGCACCTATGCTTTGTATGTCAACCTCTATTGTAGCATCTTCTTTATGACAGCCAT
GAGCTTTTTCCGGTGCATTGCAATTGTTTTTCCAGTCCAGAACATTAATTTGGTTACACAGAAAAAAGCC
AGGTTTGTGTGTGTAGGTATTTGGATTTTTGTGATTTTGACCAGTTCTCCATTTCTAATGGCCAAACCAC
AAAAAGATGAGAAAAATAATACCAAGTGCTTTGAGCCCCCACAAGACAATCAAACTAAAAATCATGTTTT
GGTCTTGCATTATGTGTCATTGTTTGTTGGCTTTATCATCCCTTTTGTTATTATAATTGTCTGTTACACA
ATGATCATTTTGACCTTACTAAAAAAATCAATGAAAAAAAATCTGTCAAGTCATAAAAAGGCTATAGGAA
TGATCATGGTCGTGACCGCTGCCTTTTTAGTCAGTTTCATGCCATATCATATTCAACGTACCATTCACCT
TCATTTTTTACACAATGAAACTAAACCCTGTGATTCTGTCCTTAGAATGCAGAAGTCCGTGGTCATAACC
TTGTCTCTGGCTGCATCCAATTGTTGCTTTGACCCTCTCCTATATTTCTTTTCTGGGGGTAACTTTAGGA
AAAGGCTGTCTACATTCAGAAAGCATTCTTTGTCCAGCGTGACTTATGTACCCAGAAAGAAGGCCTCTTT
GCCAGAAAAAGGAGAAGAAATATGTAAAGTATAG

Translation (337 aa):
MDETGNLTVSSATCHDTIDDFRNQVYSTLYSMISVVGFFGNGFVLYVLIKTYHKKSAFQVYMINLAVADL
LCVCTLPLRVVYYVHKGIWLFGDFLCRLSTYALYVNLYCSIFFMTAMSFFRCIAIVFPVQNINLVTQKKA
RFVCVGIWIFVILTSSPFLMAKPQKDEKNNTKCFEPPQDNQTKNHVLVLHYVSLFVGFIIPFVIIIVCYT
MIILTLLKKSMKKNLSSHKKAIGMIMVVTAAFLVSFMPYHIQRTIHLHFLHNETKPCDSVLRMQKSVVIT
LSLAASNCCFDPLLYFFSGGNFRKRLSTFRKHSLSSVTYVPRKKASLPEKGEEICKV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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