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Report for CCDS14135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14135.1 Public Homo sapiens X SHROOM2 24 110 108 CCDS HistoryNCBI Gene:357Re-query CCDS DB by CCDS ID:14135.1Re-query CCDS DB by GeneID:357See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14135.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380913.8 ENSP00000370299.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380913.8Link to Ensembl Protein Viewer:ENSP00000370299.3Re-query CCDS DB by Nucleotide ID:ENST00000380913Re-query CCDS DB by Protein ID:ENSP00000370299
Original member Current member NCBI NM_001649.4 NP_001640.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001649.4Link to Protein Sequence:NP_001640.1Re-query CCDS DB by Nucleotide ID:NM_001649Re-query CCDS DB by Protein ID:NP_001640Link to BLAST:NP_001640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001640.1 1616 Q13796 1616 100% 0 0

Chromosomal Locations for CCDS 14135.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9786546 9786710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9873652 9873803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9890977 9891108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9894358 9896698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9898190 9898290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9932175 9932870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9937134 9937685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9939195 9939366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9944641 9944913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9946671 9946937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4851 nt):
ATGGAGGGCGCCGAGCCCCGCGCGCGGCCCGAGCGCCTGGCCGAGGCCGAGACGCGGGCGGCGGACGGCG
GGCGCCTGGTGGAGGTGCAGCTGAGCGGCGGCGCCCCGTGGGGCTTCACCCTGAAGGGCGGCCGCGAGCA
CGGCGAGCCGCTGGTCATCACCAAGATTGAAGAGGGCAGTAAAGCCGCGGCGGTCGACAAGTTACTGGCT
GGAGATGAGATCGTCGGCATCAATGACATTGGTCTCTCAGGGTTTAGACAGGAAGCGATTTGCCTGGTGA
AGGGGTCCCATAAGACCCTGAAGCTGGTCGTCAAAAGGAGGAGCGAGCTGGGCTGGAGGCCTCACTCCTG
GCATGCCACCAAGTTCTCTGACAGCCACCCCGAGCTAGCGGCCTCCCCATTCACCTCCACCAGCGGCTGT
CCTTCCTGGTCCGGCCGACACCACGCGAGTTCTTCCTCCCACGACCTGTCCAGTTCCTGGGAGCAGACGA
ACCTACAGCGCACCTTAGATCACTTCAGCTCCTTGGGGAGCGTTGACAGCCTGGACCACCCCTCCAGTCG
CCTCTCGGTGGCCAAGTCCAACAGCAGCATCGACCACCTGGGCAGCCACAGCAAGCGCGACTCGGCCTAC
GGCTCCTTCTCCACCAGCTCTAGCACTCCTGACCACACCTTGTCCAAAGCCGACACGTCCTCCGCAGAGA
ACATCCTCTACACTGTGGGCCTCTGGGAGGCTCCCAGGCAGGGTGGCCGGCAGGCCCAGGCCGCAGGCGA
CCCTCAGGGCTCGGAGGAGAAGCTCAGTTGTTTCCCGCCCAGGGTCCCCGGTGACAGCGGCAAAGGCCCC
AGGCCAGAGTACAATGCCGAGCCCAAGCTGGCTGCCCCTGGGAGGTCCAATTTTGGGCCAGTCTGGTATG
TTCCCGATAAGAAGAAAGCACCATCATCCCCACCTCCTCCCCCTCCCCCTCTCCGCAGTGACAGCTTTGC
TGCCACCAAGAGCCACGAGAAGGCCCAGGGCCCTGTGTTCTCAGAGGCGGCTGCGGCACAGCACTTTACG
GCCCTGGCCCAGGCTCAGCCTCGTGGTGACCGGAGACCAGAGCTCACCGATCGGCCTTGGAGGTCAGCAC
ACCCGGGGAGCCTCGGGAAGGGATCGGGAGGCCCGGGCTGCCCACAGGAGGCCCACGCAGACGGCAGCTG
GCCGCCCTCCAAGGATGGAGCTTCCAGTAGGCTGCAGGCCTCTCTGTCCAGCTCAGATGTGCGCTTCCCT
CAGTCTCCTCATAGCGGCCGACACCCTCCCCTATACAGCGACCACAGCCCCCTCTGTGCTGACAGCCTTG
GGCAGGAGCCAGGGGCTGCCAGCTTCCAGAACGACAGCCCTCCTCAGGTGAGGGGGCTCAGCAGCTGTGA
CCAGAAGCTGGGGAGCGGCTGGCAGGGTCCCCGGCCCTGTGTGCAGGGAGACCTGCAAGCAGCACAGCTC
TGGGCGGGATGCTGGCCTTCTGACACAGCCCTTGGAGCCCTCGAGAGTCTTCCCCCACCCACGGTGGGCC
AGAGCCCACGCCATCACCTACCTCAGCCTGAGGGTCCTCCGGATGCCCGCGAGACAGGACGGTGTTACCC
GCTGGACAAAGGGGCCGAGGGCTGCTCCGCGGGAGCCCAGGAGCCTCCCAGGGCCAGCCGTGCAGAAAAA
GCCAGCCAGAGGCTGGCAGCCAGCATCACGTGGGCAGATGGGGAGAGCAGCAGGATCTGCCCGCAGGAGA
CGCCCCTGTTGCACTCCCTGACCCAGGAGGGGAAGCGCCGGCCTGAGAGCAGTCCAGAGGACAGCGCCAC
CAGACCGCCACCGTTCGACGCCCACGTGGGCAAGCCCACCCGAAGAAGCGACCGCTTTGCCACCACCCTG
CGGAATGAGATCCAGATGCATAGAGCCAAGCTGCAGAAGAGCCGGAGCACAGTGGCTCTGACTGCAGCAG
GGGAGGCGGAGGATGGCACCGGCCGCTGGAGGGCCGGGTTGGGAGGTGGCACCCAGGAAGGACCCCTCGC
TGGCACCTATAAAGACCACCTGAAAGAGGCCCAAGCCCGGGTCCTGAGGGCCACGTCCTTCAAGCGCCGC
GACTTGGACCCCAACCCAGGAGACCTATACCCGGAGTCACTGGAACACCGGATGGGGGATCCAGACACTG
TCCCCCACTTCTGGGAGGCAGGCCTGGCCCAGCCACCCTCATCTACAAGTGGCGGGCCCCACCCGCCCCG
CATCGGAGGCCGGAGACGGTTCACAGCTGAGCAGAAATTGAAGTCCTACTCGGAACCTGAGAAGATGAAC
GAGGTGGGCCTCACGAGGGGCTACAGTCCTCACCAGCACCCCAGGACATCTGAGGATACTGTGGGCACGT
TTGCTGACAGGTGGAAGTTTTTTGAGGAAACGAGCAAACCTGTTCCCCAGAGGCCTGCCCAGAAGCAAGC
TCTTCACGGAATCCCGAGAGACAAGCCAGAGAGGCCGCGGACAGCGGGCCGCACATGTGAGGGCACGGAG
CCCTGGTCGCGCACCACCTCCCTTGGGGACAGCCTCAACGCTCACAGCGCAGCGGAGAAGGCAGGGACTT
CAGACCTGCCGCGGAGGCTCGGCACCTTTGCAGAGTATCAGGCCTCTTGGAAGGAACAGAGGAAACCTCT
GGAGGCCAGGAGCTCTGGGCGCTGCCACTCAGCGGATGACATCCTGGATGTGAGCCTGGACCCACAGGAG
AGGCCGCAGCACGTTCATGGGAGGTCCCGGTCTTCACCGTCCACAGACCACTACAAGCAGGAAGCTTCTG
TCGAACTGCGAAGGCAGGCAGGGGACCCCGGCGAGCCCAGAGAAGAGCTTCCCTCCGCAGTCCGGGCCGA
GGAGGGACAGTCCACGCCGAGACAAGCAGATGCCCAGTGTCGGGAAGGCAGCCCAGGATCACAGCAGCAC
CCACCGAGTCAGAAGGCACCGAACCCACCCACATTCTCTGAACTATCTCACTGCCGGGGAGCCCCAGAGC
TGCCCCGGGAGGGCCGGGGCCGAGCGGGAACCCTACCTCGAGATTATAGATACTCGGAGGAGAGCACCCC
AGCAGACTTGGGACCCCGAGCCCAGAGCCCTGGCTCACCCCTGCATGCTCGAGGACAAGACTCGTGGCCA
GTGAGCTCAGCCCTGCTCTCCAAGAGGCCAGCCCCACAGAGGCCACCGCCACCCAAGCGCGAGCCCAGGA
GATACAGGGCCACAGACGGCGCACCTGCTGACGCCCCCGTGGGCGTCCTCGGCAGGCCCTTCCCAACGCC
ATCCCCTGCGTCCCTGGATGTGTATGTGGCCCGCCTGTCCCTCTCCCACAGCCCCTCTGTGTTCAGCAGT
GCCCAGCCCCAGGACACCCCGAAGGCCACTGTCTGTGAGCGTGGAAGCCAGCATGTGAGCGGGGACGCAT
CACGTCCTCTGCCAGAAGCACTGCTCCCTCCCAAGCAGCAGCACCTGCGCCTGCAGACGGCCACCATGGA
GACCTCGCGCTCCCCCTCGCCCCAGTTCGCCCCCCAGAAACTGACGGACAAACCTCCCCTGCTCATCCAG
GATGAGGATTCAACCAGAATTGAGCGGGTGATGGACAACAACACCACGGTGAAGATGGTGCCCATCAAGA
TCGTGCACTCGGAGAGCCAGCCAGAGAAGGAGAGCCGCCAGAGCCTGGCATGCCCCGCCGAGCCACCTGC
CCTGCCCCACGGGCTGGAGAAAGACCAGATCAAGACGCTGAGCACATCTGAGCAGTTCTACTCGCGCTTC
TGTCTGTACACGCGGCAGGGTGCTGAGCCCGAGGCCCCACATAGGGCCCAGCCGGCTGAGCCCCAGCCCC
TGGGCACCCAGGTGCCCCCCGAGAAAGACCGCTGCACCTCCCCTCCAGGGCTCAGCTACATGAAGGCCAA
AGAGAAGACTGTGGAAGACCTGAAGTCGGAGGAGCTGGCCAGGGAGATCGTGGGGAAGGATAAGTCCCTG
GCCGACATCCTGGATCCCAGTGTGAAGATCAAAACCACTATGGACTTGATGGAAGGCATCTTCCCCAAAG
ACGAGCACCTCCTGGAAGAAGCCCAGCAACGGAGGAAGCTGCTCCCCAAAATCCCCTCTCCTAGAAGCAC
AGAGGAGAGGAAAGAGGAGCCCAGCGTGCCTGCGGCCGTGTCCCTGGCCACCAATTCTACCTACTACAGC
ACGTCGGCCCCCAAGGCGGAGCTGCTGATCAAGATGAAGGACCTGCAGGAGCAGCAGGAGCACGAAGAGG
ATTCGGGAAGCGACTTGGACCACGACCTGTCGGTGAAGAAGCAGGAGCTCATCGAGAGCATCAGCCGCAA
GCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTGCTGGAGGACGTGCAGGCCAACACCGTGCTGGGGGCC
GAGGTGGAGGCCATCGTGAAAGGCGTCTGCAAGCCCAGCGAGTTTGACAAGTTCCGGATGTTCATTGGAG
ACCTGGACAAAGTGGTGAACCTCCTGCTGTCGCTGTCAGGCCGCCTGGCCCGGGTGGAGAATGCCCTCAA
TAATTTGGACGACGGCGCTTCTCCCGGTGATCGGCAATCACTGCTTGAGAAGCAGAGAGTCCTGATCCAG
CAGCACGAGGACGCCAAGGAGCTCAAGGAGAACCTGGACCGCCGCGAGCGCATCGTCTTTGACATTTTGG
CCAACTATCTGAGCGAGGAGAGCCTCGCGGACTATGAGCACTTCGTGAAGATGAAGTCGGCCCTCATCAT
CGAGCAGCGGGAGCTGGAAGATAAAATCCACCTTGGTGAAGAGCAGCTGAAGTGCTTATTGGACAGCCTT
CAGCCCGAAAGGGGCAAATAA

Translation (1616 aa):
MEGAEPRARPERLAEAETRAADGGRLVEVQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAVDKLLA
GDEIVGINDIGLSGFRQEAICLVKGSHKTLKLVVKRRSELGWRPHSWHATKFSDSHPELAASPFTSTSGC
PSWSGRHHASSSSHDLSSSWEQTNLQRTLDHFSSLGSVDSLDHPSSRLSVAKSNSSIDHLGSHSKRDSAY
GSFSTSSSTPDHTLSKADTSSAENILYTVGLWEAPRQGGRQAQAAGDPQGSEEKLSCFPPRVPGDSGKGP
RPEYNAEPKLAAPGRSNFGPVWYVPDKKKAPSSPPPPPPPLRSDSFAATKSHEKAQGPVFSEAAAAQHFT
ALAQAQPRGDRRPELTDRPWRSAHPGSLGKGSGGPGCPQEAHADGSWPPSKDGASSRLQASLSSSDVRFP
QSPHSGRHPPLYSDHSPLCADSLGQEPGAASFQNDSPPQVRGLSSCDQKLGSGWQGPRPCVQGDLQAAQL
WAGCWPSDTALGALESLPPPTVGQSPRHHLPQPEGPPDARETGRCYPLDKGAEGCSAGAQEPPRASRAEK
ASQRLAASITWADGESSRICPQETPLLHSLTQEGKRRPESSPEDSATRPPPFDAHVGKPTRRSDRFATTL
RNEIQMHRAKLQKSRSTVALTAAGEAEDGTGRWRAGLGGGTQEGPLAGTYKDHLKEAQARVLRATSFKRR
DLDPNPGDLYPESLEHRMGDPDTVPHFWEAGLAQPPSSTSGGPHPPRIGGRRRFTAEQKLKSYSEPEKMN
EVGLTRGYSPHQHPRTSEDTVGTFADRWKFFEETSKPVPQRPAQKQALHGIPRDKPERPRTAGRTCEGTE
PWSRTTSLGDSLNAHSAAEKAGTSDLPRRLGTFAEYQASWKEQRKPLEARSSGRCHSADDILDVSLDPQE
RPQHVHGRSRSSPSTDHYKQEASVELRRQAGDPGEPREELPSAVRAEEGQSTPRQADAQCREGSPGSQQH
PPSQKAPNPPTFSELSHCRGAPELPREGRGRAGTLPRDYRYSEESTPADLGPRAQSPGSPLHARGQDSWP
VSSALLSKRPAPQRPPPPKREPRRYRATDGAPADAPVGVLGRPFPTPSPASLDVYVARLSLSHSPSVFSS
AQPQDTPKATVCERGSQHVSGDASRPLPEALLPPKQQHLRLQTATMETSRSPSPQFAPQKLTDKPPLLIQ
DEDSTRIERVMDNNTTVKMVPIKIVHSESQPEKESRQSLACPAEPPALPHGLEKDQIKTLSTSEQFYSRF
CLYTRQGAEPEAPHRAQPAEPQPLGTQVPPEKDRCTSPPGLSYMKAKEKTVEDLKSEELAREIVGKDKSL
ADILDPSVKIKTTMDLMEGIFPKDEHLLEEAQQRRKLLPKIPSPRSTEERKEEPSVPAAVSLATNSTYYS
TSAPKAELLIKMKDLQEQQEHEEDSGSDLDHDLSVKKQELIESISRKLQVLREARESLLEDVQANTVLGA
EVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDGASPGDRQSLLEKQRVLIQ
QHEDAKELKENLDRRERIVFDILANYLSEESLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLLDSL
QPERGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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