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Report for CCDS13647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13647.1 Public Homo sapiens 21 HLCS 24 110 108 CCDS HistoryNCBI Gene:3141Re-query CCDS DB by CCDS ID:13647.1Re-query CCDS DB by GeneID:3141See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336648.8 ENSP00000338387.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336648.8Link to Ensembl Protein Viewer:ENSP00000338387.3Re-query CCDS DB by Nucleotide ID:ENST00000336648Re-query CCDS DB by Protein ID:ENSP00000338387
Original member Current member EBI ENST00000399120.5 ENSP00000382071.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399120.5Link to Ensembl Protein Viewer:ENSP00000382071.1Re-query CCDS DB by Nucleotide ID:ENST00000399120Re-query CCDS DB by Protein ID:ENSP00000382071
Original member Current member EBI ENST00000612277.4 ENSP00000479939.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612277.4Link to Ensembl Protein Viewer:ENSP00000479939.1Re-query CCDS DB by Nucleotide ID:ENST00000612277Re-query CCDS DB by Protein ID:ENSP00000479939
Original member Current member EBI ENST00000675307.1 ENSP00000501750.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675307.1Link to Ensembl Protein Viewer:ENSP00000501750.1Re-query CCDS DB by Nucleotide ID:ENST00000675307Re-query CCDS DB by Protein ID:ENSP00000501750
Original member Current member NCBI NM_000411.8 NP_000402.3 Accepted alive Link to Nucleotide Sequence:NM_000411.8Link to Protein Sequence:NP_000402.3Re-query CCDS DB by Nucleotide ID:NM_000411Re-query CCDS DB by Protein ID:NP_000402Link to BLAST:NP_000402.3
Original member Current member NCBI NM_001242784.3 NP_001229713.1 Accepted alive Link to Nucleotide Sequence:NM_001242784.3Link to Protein Sequence:NP_001229713.1Re-query CCDS DB by Nucleotide ID:NM_001242784Re-query CCDS DB by Protein ID:NP_001229713Link to BLAST:NP_001229713.1
Original member Current member NCBI NM_001242785.2 NP_001229714.1 Accepted alive Link to Nucleotide Sequence:NM_001242785.2Link to Protein Sequence:NP_001229714.1Re-query CCDS DB by Nucleotide ID:NM_001242785Re-query CCDS DB by Protein ID:NP_001229714Link to BLAST:NP_001229714.1
Original member Current member NCBI NM_001352515.2 NP_001339444.1 Accepted alive Link to Nucleotide Sequence:NM_001352515.2Link to Protein Sequence:NP_001339444.1Re-query CCDS DB by Nucleotide ID:NM_001352515Re-query CCDS DB by Protein ID:NP_001339444Link to BLAST:NP_001339444.1
Original member Current member NCBI NM_001352516.2 NP_001339445.1 Accepted alive Link to Nucleotide Sequence:NM_001352516.2Link to Protein Sequence:NP_001339445.1Re-query CCDS DB by Nucleotide ID:NM_001352516Re-query CCDS DB by Protein ID:NP_001339445Link to BLAST:NP_001339445.1
Original member Current member NCBI NM_001352517.1 NP_001339446.1 Accepted alive Link to Nucleotide Sequence:NM_001352517.1Link to Protein Sequence:NP_001339446.1Re-query CCDS DB by Nucleotide ID:NM_001352517Re-query CCDS DB by Protein ID:NP_001339446Link to BLAST:NP_001339446.1
Original member Current member NCBI NM_001352518.2 NP_001339447.1 Accepted alive Link to Nucleotide Sequence:NM_001352518.2Link to Protein Sequence:NP_001339447.1Re-query CCDS DB by Nucleotide ID:NM_001352518Re-query CCDS DB by Protein ID:NP_001339447Link to BLAST:NP_001339447.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000402.3 726 P50747-1 726 100% 0 0
NP_001229713.1 726 P50747-1 726 100% 0 0
NP_001229714.1 726 P50747-1 726 100% 0 0
NP_001339444.1 726 P50747-1 726 100% 0 0
NP_001339445.1 726 P50747-1 726 100% 0 0
NP_001339446.1 726 P50747-1 726 100% 0 0
NP_001339447.1 726 P50747-1 726 100% 0 0

Chromosomal Locations for CCDS 13647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 36754246 36754417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36756542 36756755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36759727 36759841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36765012 36765172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36767218 36767285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36896860 36897131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36930251 36930433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36936449 36937392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36938832 36938883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGGAAGATAGACTCCACATGGATAATGGACTGGTACCCCAAAAGATTGTGTCGGTGCACTTGCAGGACT
CCACTCTGAAGGAAGTTAAGGATCAGGTCTCAAACAAGCAAGCCCAGATCCTAGAGCCGAAGCCTGAACC
TTCTCTTGAGATTAAGCCTGAGCAGGACGGTATGGAGCATGTTGGCAGAGATGACCCAAAGGCTCTTGGT
GAAGAACCCAAACAAAGGAGAGGCAGTGCCTCTGGGAGTGAGCCTGCTGGGGACAGTGACAGGGGAGGGG
GCCCCGTTGAGCATTATCACCTCCATCTGTCTAGTTGCCACGAGTGTCTGGAACTTGAGAACAGCACCAT
TGAGTCAGTCAAGTTTGCGTCTGCCGAGAACATTCCAGACCTTCCCTACGATTATAGCAGCAGTTTGGAG
AGTGTTGCTGATGAGACCTCCCCCGAAAGAGAAGGGAGGAGAGTCAACCTCACGGGAAAGGCACCCAACA
TCCTCCTCTATGTGGGCTCCGACTCCCAGGAAGCCCTCGGCCGGTTCCACGAGGTCCGGTCTGTGCTGGC
CGACTGTGTGGACATTGACAGTTATATTCTCTACCACCTGCTGGAGGACAGTGCTCTCAGAGACCCGTGG
ACGGACAACTGTCTGCTGTTGGTCATTGCTACCAGGGAGTCCATTCCCGAAGACCTGTACCAGAAGTTCA
TGGCCTATCTTTCTCAGGGAGGGAAGGTGTTGGGCCTGTCTTCATCCTTCACCTTTGGTGGCTTTCAGGT
GACAAGCAAGGGTGCACTGCACAAGACAGTCCAGAACTTGGTTTTCTCCAAGGCTGACCAGAGCGAGGTG
AAGCTCAGCGTCTTGAGCAGTGGCTGCAGGTACCAGGAAGGCCCCGTCCGGCTCAGCCCCGGCAGGCTCC
AGGGCCACCTGGAGAATGAGGACAAGGACAGGATGATTGTGCATGTGCCTTTTGGAACTCGCGGGGGAGA
AGCTGTTCTTTGCCAGGTGCACTTAGAACTACCTCCCAGCTCCAACATAGTGCAAACTCCAGAAGATTTT
AACTTGCTCAAGTCAAGCAATTTTAGAAGATACGAAGTCCTTAGAGAGATTCTGACAACCCTTGGCCTCA
GCTGTGACATGAAACAAGTTCCTGCCTTAACTCCTCTTTACTTGCTGTCAGCTGCGGAGGAAATCAGGGA
TCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTT
AGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGG
AGGCCTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAA
AGTAATTTTGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCG
CAGGAAATGGGCTTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAAAGGACGGGGAGGGAATGTGTGGC
TGAGCCCTGTGGGATGTGCTCTTTCTACTCTGCTCATCTCCATTCCACTGAGATCCCAGCTGGGACAGAG
GATCCCGTTTGTCCAGCATCTGATGTCCGTGGCTGTCGTGGAAGCAGTGAGGTCCATTCCCGAGTATCAG
GATATCAACTTACGAGTGAAGTGGCCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTC
TGGTTAACTCAACACTCATGGGAGAAACATTTTATATACTTATTGGCTGTGGATTTAATGTGACTAACAG
TAACCCTACCATCTGCATCAACGACCTCATCACAGAATACAATAAACAACACAAGGCAGAACTGAAGCCC
TTAAGAGCCGATTATCTCATCGCCAGAGTCGTGACTGTGCTGGAGAAACTGATCAAAGAGTTTCAGGACA
AAGGGCCCAACAGCGTCCTTCCCCTTTATTACCGATACTGGGTCCACAGTGGTCAGCAAGTCCATCTGGG
CAGCGCAGAGGGACCAAAGGTGTCCATCGTTGGCCTGGACGATTCTGGCTTCCTCCAGGTTCACCAGGAG
GGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGACATGCTGAGAAACCTCATCCTCCCCA
AACGGCGGTAA

Translation (726 aa):
MEDRLHMDNGLVPQKIVSVHLQDSTLKEVKDQVSNKQAQILEPKPEPSLEIKPEQDGMEHVGRDDPKALG
EEPKQRRGSASGSEPAGDSDRGGGPVEHYHLHLSSCHECLELENSTIESVKFASAENIPDLPYDYSSSLE
SVADETSPEREGRRVNLTGKAPNILLYVGSDSQEALGRFHEVRSVLADCVDIDSYILYHLLEDSALRDPW
TDNCLLLVIATRESIPEDLYQKFMAYLSQGGKVLGLSSSFTFGGFQVTSKGALHKTVQNLVFSKADQSEV
KLSVLSSGCRYQEGPVRLSPGRLQGHLENEDKDRMIVHVPFGTRGGEAVLCQVHLELPPSSNIVQTPEDF
NLLKSSNFRRYEVLREILTTLGLSCDMKQVPALTPLYLLSAAEEIRDPLMQWLGKHVDSEGEIKSGQLSL
RFVSSYVSEVEITPSCIPVVTNMEAFSSEHFNLEIYRQNLQTKQLGKVILFAEVTPTTMRLLDGLMFQTP
QEMGLIVIAARQTEGKGRGGNVWLSPVGCALSTLLISIPLRSQLGQRIPFVQHLMSVAVVEAVRSIPEYQ
DINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLITEYNKQHKAELKP
LRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVHSGQQVHLGSAEGPKVSIVGLDDSGFLQVHQE
GGEVVTVHPDGNSFDMLRNLILPKRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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