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Report for CCDS1318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1318.1 Public Homo sapiens 1 TNR 24 110 108 CCDS HistoryNCBI Gene:7143Re-query CCDS DB by CCDS ID:1318.1Re-query CCDS DB by GeneID:7143See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1318.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263525.6 ENSP00000263525.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000263525.6Link to Ensembl Protein Viewer:ENSP00000263525.2Re-query CCDS DB by Nucleotide ID:ENST00000263525Re-query CCDS DB by Protein ID:ENSP00000263525
Original member Current member EBI ENST00000367674.7 ENSP00000356646.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367674.7Link to Ensembl Protein Viewer:ENSP00000356646.1Re-query CCDS DB by Nucleotide ID:ENST00000367674Re-query CCDS DB by Protein ID:ENSP00000356646
Original member Current member NCBI NM_003285.3 NP_003276.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003285.3Link to Protein Sequence:NP_003276.3Re-query CCDS DB by Nucleotide ID:NM_003285Re-query CCDS DB by Protein ID:NP_003276Link to BLAST:NP_003276.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003276.3 1358 Q92752-1 1358 100% 0 0

Chromosomal Locations for CCDS 1318.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175323357 175323476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175324356 175324519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175330074 175330235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175335711 175335807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175337528 175337679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175354391 175354523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175355503 175355633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175356319 175356462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175359612 175359731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175362663 175362809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175363708 175363827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175365010 175365279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175365875 175366138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175367208 175367297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175379552 175379737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175386032 175386301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175391288 175391438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175393780 175393895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175396544 175396807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175403140 175403616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175406216 175406714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4077 nt):
ATGGGGGCAGATGGGGAAACAGTGGTTCTGAAGAACATGCTCATTGGCATCAACCTGATCCTTCTGGGCT
CCATGATCAAGCCTTCAGAGTGTCAGCTGGAGGTCACCACAGAAAGGGTCCAGAGACAGTCAGTGGAGGA
GGAGGGAGGCATTGCCAACTACAACACATCCAGCAAAGAGCAGCCTGTGGTCTTCAACCACGTGTACAAC
ATTAACGTGCCCTTGGACAACCTCTGCTCCTCAGGGCTAGAGGCCTCTGCTGAGCAGGAGGTGAGTGCAG
AAGACGAGACTCTGGCAGAGTACATGGGCCAGACCTCAGACCACGAGAGCCAGGTCACCTTTACACACAG
GATCAACTTCCCCAAAAAGGCCTGTCCATGTGCCAGTTCAGCCCAGGTGCTGCAGGAGCTGCTGAGCCGG
ATCGAGATGCTGGAGAGGGAGGTGTCGGTGCTGCGAGACCAGTGCAACGCCAACTGCTGCCAAGAAAGTG
CTGCCACAGGACAACTGGACTATATCCCTCACTGCAGTGGCCACGGCAACTTTAGCTTTGAGTCCTGTGG
CTGCATCTGCAACGAAGGCTGGTTTGGCAAGAATTGCTCGGAGCCCTACTGCCCGCTGGGTTGCTCCAGC
CGGGGGGTGTGTGTGGATGGCCAGTGCATCTGTGACAGCGAGTACAGCGGGGATGACTGTTCCGAACTCC
GGTGCCCAACAGACTGCAGCTCCCGGGGGCTCTGCGTGGACGGGGAGTGTGTCTGTGAAGAGCCCTACAC
TGGCGAGGACTGCAGGGAACTGAGGTGCCCTGGGGACTGTTCGGGGAAGGGGAGATGTGCCAACGGTACC
TGTTTATGCGAGGAGGGCTACGTTGGTGAGGACTGCGGCCAGCGGCAGTGTCTGAATGCCTGCAGTGGGC
GAGGACAATGTGAGGAGGGGCTCTGCGTCTGTGAAGAGGGCTACCAGGGCCCTGACTGCTCAGCAGTTGC
CCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATG
GCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTCCAGCTCCAGCAGCGGGTGC
CTGGAGATTGGAGTGGTGTCACCATCACGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGC
TGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACCCATCTCTCCACTCCTCAAGGG
CTACAATTTAAGACGATCACAGAGACCACCGTGGAGGTGCAGTGGGAGCCCTTCTCATTTTCCTTCGATG
GGTGGGAAATCAGCTTCATTCCAAAGAACAATGAAGGGGGAGTGATTGCTCAGGTCCCCAGCGATGTTAC
GTCCTTTAACCAGACAGGACTAAAGCCTGGGGAGGAATACATTGTCAATGTGGTGGCTCTGAAAGAACAG
GCCCGCAGCCCCCCTACCTCGGCCAGCGTCTCCACAGTCATTGACGGCCCCACGCAGATCCTGGTTCGCG
ATGTCTCGGACACTGTGGCTTTTGTGGAGTGGATTCCCCCTCGAGCCAAAGTCGATTTCATTCTTTTGAA
ATATGGCCTGGTGGGCGGGGAAGGTGGGAGGACCACCTTCCGGCTGCAGCCTCCCCTGAGCCAATACTCA
GTGCAGGCCCTGCGGCCTGGCTCCCGATACGAGGTGTCAGTCAGTGCCGTCCGAGGGACCAACGAGAGCG
ATTCTGCCACCACTCAGTTCACAACAGAGATCGATGCCCCCAAGAACTTGCGAGTTGGTTCTCGCACAGC
AACCAGCCTTGACCTCGAGTGGGATAACAGTGAAGCCGAAGTTCAGGAGTACAAGGTTGTGTACAGCACC
CTGGCGGGTGAGCAATATCATGAGGTACTGGTCCCCAGGGGCATTGGTCCAACCACCAGGGCCACCCTGA
CAGATCTGGTACCTGGCACTGAGTATGGAGTTGGAATATCTGCCGTCATGAACTCACAGCAAAGCGTGCC
AGCCACCATGAATGCCAGGACTGAACTTGACAGTCCCCGAGACCTCATGGTGACAGCCTCCTCGGAGACC
TCCATCTCCCTCATCTGGACCAAGGCCAGTGGCCCCATTGACCACTACCGAATTACCTTTACCCCATCCT
CTGGGATTGCCTCAGAAGTCACCGTACCCAAGGACAGGACCTCATACACACTAACAGATCTAGAGCCTGG
GGCAGAGTACATCATTTCCGTCACTGCTGAGAGGGGTCGGCAGCAGAGCTTGGAGTCCACTGTGGATGCT
TTCACAGGCTTCCGTCCCATCTCTCATCTGCACTTTTCTCATGTGACCTCCTCCAGTGTGAACATCACTT
GGAGTGATCCATCTCCCCCAGCAGACAGACTCATTCTTAACTACAGCCCCAGGGATGAGGAGGAAGAGAT
GATGGAGGTCTCCCTGGATGCCACCAAGAGGCATGCTGTCCTGATGGGCCTGCAACCAGCCACAGAGTAT
ATTGTGAACCTTGTGGCTGTCCATGGCACAGTGACCTCTGAGCCCATTGTGGGCTCCATCACCACAGGAA
TTGATCCCCCAAAAGACATCACAATTAGCAATGTGACCAAGGACTCAGTGATGGTCTCCTGGAGCCCTCC
TGTTGCATCTTTCGATTACTACCGAGTATCATATCGACCCACCCAAGTGGGACGACTAGACAGCTCAGTG
GTGCCCAACACTGTGACAGAATTCACCATCACCAGACTGAACCCAGCTACCGAATACGAAATCAGCCTCA
ACAGCGTGCGGGGCAGGGAGGAAAGCGAGCGCATCTGTACTCTTGTGCACACAGCCATGGACAACCCTGT
GGATCTGATTGCTACCAATATCACTCCAACAGAAGCCCTGCTGCAGTGGAAGGCACCAGTGGGTGAGGTG
GAGAACTACGTCATTGTTCTTACACACTTTGCAGTCGCTGGAGAGACCATCCTTGTTGACGGAGTCAGTG
AGGAATTTCGGCTTGTTGACCTGCTTCCTAGCACCCACTATACTGCCACCATGTATGCCACCAATGGACC
TCTCACCAGTGGCACCATCAGCACCAACTTTTCTACTCTCCTGGACCCTCCGGCAAACCTGACAGCCAGT
GAAGTCACCAGACAAAGTGCCCTGATCTCCTGGCAGCCTCCCAGGGCAGAGATTGAAAATTATGTCTTGA
CCTACAAATCCACCGATGGAAGCCGCAAGGAGCTGATTGTGGATGCAGAAGACACCTGGATTCGACTGGA
GGGCCTGTTGGAGAACACAGACTACACGGTGCTCCTGCAGGCAGCACAGGACACCACGTGGAGCAGCATC
ACCTCCACCGCTTTCACCACAGGAGGCCGGGTGTTCCCTCATCCCCAAGACTGTGCCCAGCATTTGATGA
ATGGAGACACTTTGAGTGGGGTTTACCCCATCTTCCTCAATGGGGAGCTGAGCCAGAAATTACAAGTGTA
CTGTGATATGACCACCGACGGGGGCGGCTGGATTGTATTCCAGAGGCGGCAGAATGGCCAAACTGATTTT
TTCCGGAAATGGGCTGATTACCGTGTTGGCTTCGGGAACGTGGAGGATGAGTTCTGGCTGGGGCTGGACA
ATATACACAGGATCACATCCCAGGGCCGCTATGAGCTGCGCGTGGACATGCGGGATGGCCAAGAGGCCGC
CTTCGCCTCCTACGACAGGTTCTCTGTCGAGGACAGCAGAAACCTGTACAAACTCCGCATAGGAAGCTAC
AACGGCACTGCGGGGGACTCCCTCAGCTATCATCAAGGACGCCCTTTCTCCACAGAGGATAGAGACAATG
ATGTTGCAGTGACTAACTGTGCCATGTCGTACAAGGGAGCATGGTGGTATAAGAACTGCCACCGGACCAA
CCTCAATGGGAAGTACGGGGAGTCCAGGCACAGTCAGGGCATCAACTGGTACCATTGGAAAGGCCATGAG
TTCTCCATCCCCTTTGTGGAAATGAAGATGCGCCCCTACAACCACCGTCTCATGGCAGGGAGAAAACGGC
AGTCCTTACAGTTCTGA

Translation (1358 aa):
MGADGETVVLKNMLIGINLILLGSMIKPSECQLEVTTERVQRQSVEEEGGIANYNTSSKEQPVVFNHVYN
INVPLDNLCSSGLEASAEQEVSAEDETLAEYMGQTSDHESQVTFTHRINFPKKACPCASSAQVLQELLSR
IEMLEREVSVLRDQCNANCCQESAATGQLDYIPHCSGHGNFSFESCGCICNEGWFGKNCSEPYCPLGCSS
RGVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGRCANGT
CLCEEGYVGEDCGQRQCLNACSGRGQCEEGLCVCEEGYQGPDCSAVAPPEDLRVAGISDRSIELEWDGPM
AVTEYVISYQPTALGGLQLQQRVPGDWSGVTITELEPGLTYNISVYAVISNILSLPITAKVATHLSTPQG
LQFKTITETTVEVQWEPFSFSFDGWEISFIPKNNEGGVIAQVPSDVTSFNQTGLKPGEEYIVNVVALKEQ
ARSPPTSASVSTVIDGPTQILVRDVSDTVAFVEWIPPRAKVDFILLKYGLVGGEGGRTTFRLQPPLSQYS
VQALRPGSRYEVSVSAVRGTNESDSATTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEVQEYKVVYST
LAGEQYHEVLVPRGIGPTTRATLTDLVPGTEYGVGISAVMNSQQSVPATMNARTELDSPRDLMVTASSET
SISLIWTKASGPIDHYRITFTPSSGIASEVTVPKDRTSYTLTDLEPGAEYIISVTAERGRQQSLESTVDA
FTGFRPISHLHFSHVTSSSVNITWSDPSPPADRLILNYSPRDEEEEMMEVSLDATKRHAVLMGLQPATEY
IVNLVAVHGTVTSEPIVGSITTGIDPPKDITISNVTKDSVMVSWSPPVASFDYYRVSYRPTQVGRLDSSV
VPNTVTEFTITRLNPATEYEISLNSVRGREESERICTLVHTAMDNPVDLIATNITPTEALLQWKAPVGEV
ENYVIVLTHFAVAGETILVDGVSEEFRLVDLLPSTHYTATMYATNGPLTSGTISTNFSTLLDPPANLTAS
EVTRQSALISWQPPRAEIENYVLTYKSTDGSRKELIVDAEDTWIRLEGLLENTDYTVLLQAAQDTTWSSI
TSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDF
FRKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYELRVDMRDGQEAAFASYDRFSVEDSRNLYKLRIGSY
NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINWYHWKGHE
FSIPFVEMKMRPYNHRLMAGRKRQSLQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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