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Report for CCDS12940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12940.1 Public Homo sapiens 19 GALP 24 110 108 CCDS HistoryNCBI Gene:85569Re-query CCDS DB by CCDS ID:12940.1Re-query CCDS DB by GeneID:85569See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357330.7 ENSP00000349884.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357330.7Link to Ensembl Protein Viewer:ENSP00000349884.2Re-query CCDS DB by Nucleotide ID:ENST00000357330Re-query CCDS DB by Protein ID:ENSP00000349884
Original member Current member NCBI NM_033106.4 NP_149097.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033106.4Link to Protein Sequence:NP_149097.1Re-query CCDS DB by Nucleotide ID:NM_033106Re-query CCDS DB by Protein ID:NP_149097Link to BLAST:NP_149097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149097.1 116 Q9UBC7-1 116 100% 0 0

Chromosomal Locations for CCDS 12940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56177109 56177195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56180586 56180634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56182172 56182252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56183135 56183212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56185215 56185270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGGCTCCTCCCTCCGTCCCCCTGGTCCTCCTCCTCGTCCTCTTGCTGAGCCTGGCAGAGACTCCAGCAT
CCGCACCTGCCCACCGGGGACGAGGAGGCTGGACCCTCAATAGTGCTGGCTACCTTCTGGGTCCCGTCCT
CCACCTTCCCCAAATGGGTGACCAAGACGGAAAGAGGGAGACAGCCCTTGAGATCCTAGACCTGTGGAAG
GCCATCGACGGGCTCCCCTACTCCCACCCTCCACAGCCCTCCAAGAGGAATGTGATGGAGACGTTTGCCA
AACCAGAGATTGGAGATCTGGGCATGCTCAGCATGAAAATTCCCAAGGAGGAAGATGTCCTGAAGTCATA
G

Translation (116 aa):
MAPPSVPLVLLLVLLLSLAETPASAPAHRGRGGWTLNSAGYLLGPVLHLPQMGDQDGKRETALEILDLWK
AIDGLPYSHPPQPSKRNVMETFAKPEIGDLGMLSMKIPKEEDVLKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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