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Report for CCDS12882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12882.1 Public Homo sapiens 19 TMC4 24 110 108 CCDS HistoryNCBI Gene:147798Re-query CCDS DB by CCDS ID:12882.1Re-query CCDS DB by GeneID:147798See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12882.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619895.5 ENSP00000479458.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619895.5Link to Ensembl Protein Viewer:ENSP00000479458.1Re-query CCDS DB by Nucleotide ID:ENST00000619895Re-query CCDS DB by Protein ID:ENSP00000479458
Original member Current member NCBI NM_144686.4 NP_653287.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144686.4Link to Protein Sequence:NP_653287.2Re-query CCDS DB by Nucleotide ID:NM_144686Re-query CCDS DB by Protein ID:NP_653287Link to BLAST:NP_653287.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653287.2 706 Q7Z404-1 706 99.7167% 0 2

Chromosomal Locations for CCDS 12882.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54160306 54160374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54160467 54160545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54160878 54161033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54161130 54161260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54162102 54162285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54162673 54162770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54163033 54163159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54163724 54163887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54164434 54164601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54165419 54165566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54168171 54168292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54168448 54168680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54169512 54169660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54171870 54172083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54173039 54173117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGAAGAAAACCCGACCTTGGAATCAGAAGCCTGGGGCTCCTCTAGGGAGTGGCTGGCCCCCCGGGAGG
CCAGAGGAGGCCCATCGCTGTCTTCTGTGCTGAACGAGCTGCCCAGTGCTGCCACCCTTCGGTACCGAGA
CCCTGGGGTGCTGCCTTGGGGGGCGCTGGAGGAGGAGGAGGAGGATGGAGGAAGGAGCAGAAAGGCCTTC
ACAGAAGTCACCCAGACAGAGCTGCAGGACCCTCACCCTTCCCGGGAACTGCCCTGGCCCATGCAGGCCA
GACGGGCACACAGGCAAAGAAATGCCAGCAGGGACCAGGTGGTCTATGGCTCTGGAACTAAGACGGACCG
ATGGGCGCGGCTACTTCGGAGGTCCAAGGAGAAAACAAAGGAAGGCTTGCGAAGCCTGCAGCCCTGGGCG
TGGACACTGAAGAGGATCGGGGGCCAGTTTGGCGCCGGCACGGAGTCCTACTTCTCCCTGCTGCGCTTCC
TGCTCCTTCTTAACGTGCTGGCCTCTGTGCTCATGGCCTGCATGACGCTGCTGCCCACCTGGTTGGGAGG
CGCTCCCCCAGGCCCTCCCGGCCCCGACATCTCCTCGCCCTGCGGCTCCTATAACCCCCACTCCCAGGGC
CTGGTCACCTTTGCCACCCAGCTCTTCAACTTGCTCTCGGGTGAGGGTTACCTGGAATGGTCCCCTCTCT
TCTATGGCTTCTACCCGCCCCGCCCACGCCTGGCGGTCACCTACCTGTGCTGGGCCTTTGCCGTTGGCCT
CATCTGCCTCCTGCTCATCCTGCATCGCTCGGTGTCTGGGCTGAAGCAGACACTGCTGGCGGAGTCCGAG
GCTCTGACCAGCTACAGCCACCGGGTGTTCTCGGCCTGGGACTTCGGTCTCTGCGGGGACGTCCACGTGC
GGCTGCGCCAGCGCATCATCTTGTACGAATTAAAGGTGGAGCTGGAGGAGACAGTGGTGCGGCGCCAGGC
TGCGGTGCGGACGCTGGGCCAGCAAGCCAGGGTTTGGTTGGTGCGGGTGCTGCTCAACCTGCTGGTGGTC
GCGCTCCTGGGGGCAGCCTTCTATGGCGTCTACTGGGCTACGGGGTGCACCGTGGAGCTGCAGGAGATGC
CCCTTGTCCAGGAGTTGCCACTGCTGAAGCTTGGGGTGAATTACCTTCCGTCCATCTTCATCGCTGGGGT
CAATTTTGTGCTGCCGCCCGTGTTCAAGCTCATTGCTCCACTGGAGGGCTACACTCGGAGTCGCCAGATC
GTTTTTATCCTGCTCAGGACCGTGTTTCTTCGCCTCGCCTCCCTGGTGGTCCTGCTCTTCTCTCTCTGGA
ATCAGATCACTTGTGGGGGCGACTCCGAGGCTGAGGACTGCAAAACCTGTGGCTACAATTACAAACAACT
TCCGTGCTGGGAGACTGTCCTGGGCCAGGAAATGTACAAACTTCTGCTCTTTGATCTGCTGACTGTCTTG
GCAGTCGCGCTGCTCATCCAGTTTCCTAGAAAGCTCCTCTGTGGCCTCTGTCCTGGGGCGCTGGGTCGTC
TGGCGGGGACCCAAGAGTTCCAGGTGCCCGACGAGGTGCTGGGGCTCATCTACGCGCAGACGGTGGTCTG
GGTGGGGAGTTTTTTCTGCCCTTTACTGCCCCTGCTTAACACGGTCAAGTTCCTGCTGCTTTTCTACCTG
AAGAAGCTTACCCTCTTCTCCACCTGCTCCCCGGCTGCCCGCACCTTCCGGGCCTCCGCGGCGAATTTCT
TTTTCCCCTTGGTCCTTCTCCTGGGTCTGGCCATCTCCAGCGTTCCCCTGCTTTACAGCATCTTCCTGAT
CCCGCCTTCTAAGCTGTGTGGTCCATTCCGGGGGCAGTCGTCCATCTGGGCCCAGATCCCTGAGTCTATT
TCCAGCCTCCCTGAGACCACCCAGAATTTCCTCTTCTTCCTGGGGACCCAGGCTTTTGCTGTGCCCCTTC
TGCTGATCTCCAGCATCCTGATGGCGTACACTGTGGCTCTGGCTAACTCCTACGGACGCCTCATCTCTGA
GCTCAAACGTCAGAGAGAGACGGAGGCGCAGAATAAAGTCTTCCTGGCACGGCGCGCTGTGGCGCTGACC
TCCACCAAACCGGCTCTTTGA

Translation (706 aa):
MEENPTLESEAWGSSREWLAPREARGGPSLSSVLNELPSAATLRYRDPGVLPWGALEEEEEDGGRSRKAF
TEVTQTELQDPHPSRELPWPMQARRAHRQRNASRDQVVYGSGTKTDRWARLLRRSKEKTKEGLRSLQPWA
WTLKRIGGQFGAGTESYFSLLRFLLLLNVLASVLMACMTLLPTWLGGAPPGPPGPDISSPCGSYNPHSQG
LVTFATQLFNLLSGEGYLEWSPLFYGFYPPRPRLAVTYLCWAFAVGLICLLLILHRSVSGLKQTLLAESE
ALTSYSHRVFSAWDFGLCGDVHVRLRQRIILYELKVELEETVVRRQAAVRTLGQQARVWLVRVLLNLLVV
ALLGAAFYGVYWATGCTVELQEMPLVQELPLLKLGVNYLPSIFIAGVNFVLPPVFKLIAPLEGYTRSRQI
VFILLRTVFLRLASLVVLLFSLWNQITCGGDSEAEDCKTCGYNYKQLPCWETVLGQEMYKLLLFDLLTVL
AVALLIQFPRKLLCGLCPGALGRLAGTQEFQVPDEVLGLIYAQTVVWVGSFFCPLLPLLNTVKFLLLFYL
KKLTLFSTCSPAARTFRASAANFFFPLVLLLGLAISSVPLLYSIFLIPPSKLCGPFRGQSSIWAQIPESI
SSLPETTQNFLFFLGTQAFAVPLLLISSILMAYTVALANSYGRLISELKRQRETEAQNKVFLARRAVALT
STKPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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