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Report for CCDS12733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12733.1 Public Homo sapiens 19 FUT1 24 110 108 CCDS HistoryNCBI Gene:2523Re-query CCDS DB by CCDS ID:12733.1Re-query CCDS DB by GeneID:2523See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12733.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000645652.2 ENSP00000494643.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000645652.2Link to Ensembl Protein Viewer:ENSP00000494643.1Re-query CCDS DB by Nucleotide ID:ENST00000645652Re-query CCDS DB by Protein ID:ENSP00000494643
Original member Current member NCBI NM_000148.4 NP_000139.1 Accepted alive Link to Nucleotide Sequence:NM_000148.4Link to Protein Sequence:NP_000139.1Re-query CCDS DB by Nucleotide ID:NM_000148Re-query CCDS DB by Protein ID:NP_000139Link to BLAST:NP_000139.1
Original member Current member NCBI NM_001329877.1 NP_001316806.1 Accepted alive Link to Nucleotide Sequence:NM_001329877.1Link to Protein Sequence:NP_001316806.1Re-query CCDS DB by Nucleotide ID:NM_001329877Re-query CCDS DB by Protein ID:NP_001316806Link to BLAST:NP_001316806.1
Original member Current member NCBI NM_001384359.1 NP_001371288.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384359.1Link to Protein Sequence:NP_001371288.1Re-query CCDS DB by Nucleotide ID:NM_001384359Re-query CCDS DB by Protein ID:NP_001371288Link to BLAST:NP_001371288.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000139.1 365 P19526 365 100% 0 0
NP_001316806.1 365 P19526 365 100% 0 0
NP_001371288.1 365 P19526 365 100% 0 0

Chromosomal Locations for CCDS 12733.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48750184 48751281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGTGGCTCCGGAGCCATCGTCAGCTCTGCCTGGCCTTCCTGCTAGTCTGTGTCCTCTCTGTAATCTTCT
TCCTCCATATCCATCAAGACAGCTTTCCACATGGCCTAGGCCTGTCGATCCTGTGTCCAGACCGCCGCCT
GGTGACACCCCCAGTGGCCATCTTCTGCCTGCCGGGTACTGCGATGGGCCCCAACGCCTCCTCTTCCTGT
CCCCAGCACCCTGCTTCCCTCTCCGGCACCTGGACTGTCTACCCCAATGGCCGGTTTGGTAATCAGATGG
GACAGTATGCCACGCTGCTGGCTCTGGCCCAGCTCAACGGCCGCCGGGCCTTTATCCTGCCTGCCATGCA
TGCCGCCCTGGCCCCGGTATTCCGCATCACCCTGCCCGTGCTGGCCCCAGAAGTGGACAGCCGCACGCCG
TGGCGGGAGCTGCAGCTTCACGACTGGATGTCGGAGGAGTACGCGGACTTGAGAGATCCTTTCCTGAAGC
TCTCTGGCTTCCCCTGCTCTTGGACTTTCTTCCACCATCTCCGGGAACAGATCCGCAGAGAGTTCACCCT
GCACGACCACCTTCGGGAAGAGGCGCAGAGTGTGCTGGGTCAGCTCCGCCTGGGCCGCACAGGGGACCGC
CCGCGCACCTTTGTCGGCGTCCACGTGCGCCGTGGGGACTATCTGCAGGTTATGCCTCAGCGCTGGAAGG
GTGTGGTGGGCGACAGCGCCTACCTCCGGCAGGCCATGGACTGGTTCCGGGCACGGCACGAAGCCCCCGT
TTTCGTGGTCACCAGCAACGGCATGGAGTGGTGTAAAGAAAACATCGACACCTCCCAGGGCGATGTGACG
TTTGCTGGCGATGGACAGGAGGCTACACCGTGGAAAGACTTTGCCCTGCTCACACAGTGCAACCACACCA
TTATGACCATTGGCACCTTCGGCTTCTGGGCTGCCTACCTGGCTGGCGGAGACACTGTCTACCTGGCCAA
CTTCACCCTGCCAGACTCTGAGTTCCTGAAGATCTTTAAGCCGGAGGCGGCCTTCCTGCCCGAGTGGGTG
GGCATTAATGCAGACTTGTCTCCACTCTGGACATTGGCTAAGCCTTGA

Translation (365 aa):
MWLRSHRQLCLAFLLVCVLSVIFFLHIHQDSFPHGLGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSC
PQHPASLSGTWTVYPNGRFGNQMGQYATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTP
WRELQLHDWMSEEYADLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDR
PRTFVGVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTSQGDVT
FAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEFLKIFKPEAAFLPEWV
GINADLSPLWTLAKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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