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Report for CCDS12404.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12404.2 Public Homo sapiens 19 NDUFA13 24 110 108 CCDS HistoryNCBI Gene:51079Re-query CCDS DB by CCDS ID:12404.2Re-query CCDS DB by GeneID:51079See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12404.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript, conservation and publication data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12404.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507754.9 ENSP00000423673.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000507754.9Link to Ensembl Protein Viewer:ENSP00000423673.1Re-query CCDS DB by Nucleotide ID:ENST00000507754Re-query CCDS DB by Protein ID:ENSP00000423673
Original member Current member NCBI NM_015965.7 NP_057049.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015965.7Link to Protein Sequence:NP_057049.5Re-query CCDS DB by Nucleotide ID:NM_015965Re-query CCDS DB by Protein ID:NP_057049Link to BLAST:NP_057049.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057049.5 144 Q9P0J0-1 144 100% 0 0

Chromosomal Locations for CCDS 12404.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19516239 19516332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19526182 19526260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19527281 19527352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19527701 19527770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19528007 19528126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGCGGCGTCAAAGGTGAAGCAGGACATGCCTCCGCCGGGGGGCTATGGGCCCATCGACTACAAACGGA
ACTTGCCGCGTCGAGGACTGTCGGGCTACAGCATGCTGGCCATAGGGATTGGAACCCTGATCTACGGGCA
CTGGAGCATAATGAAGTGGAACCGTGAGCGCAGGCGCCTACAAATCGAGGACTTCGAGGCTCGCATCGCG
CTGTTGCCACTGTTACAGGCAGAAACCGACCGGAGGACCTTGCAGATGCTTCGGGAGAACCTGGAGGAGG
AGGCCATCATCATGAAGGACGTGCCCGACTGGAAGGTGGGGGAGTCTGTGTTCCACACAACCCGCTGGGT
GCCCCCCTTGATCGGGGAGCTGTACGGGCTGCGCACCACAGAGGAGGCTCTCCATGCCAGCCACGGCTTC
ATGTGGTACACGTAG

Translation (144 aa):
MAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIA
LLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGELYGLRTTEEALHASHGF
MWYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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