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Report for CCDS12225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12225.1 Public Homo sapiens 19 PPAN 24 110 108 CCDS HistoryNCBI Gene:56342Re-query CCDS DB by CCDS ID:12225.1Re-query CCDS DB by GeneID:56342See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12225.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253107.12 ENSP00000253107.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253107.12Link to Ensembl Protein Viewer:ENSP00000253107.7Re-query CCDS DB by Nucleotide ID:ENST00000253107Re-query CCDS DB by Protein ID:ENSP00000253107
Original member Current member NCBI NM_020230.7 NP_064615.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020230.7Link to Protein Sequence:NP_064615.3Re-query CCDS DB by Nucleotide ID:NM_020230Re-query CCDS DB by Protein ID:NP_064615Link to BLAST:NP_064615.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064615.3 473 Q9NQ55-1 473 100% 0 0

Chromosomal Locations for CCDS 12225.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10106395 10106412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10106501 10106671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10107505 10107606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10107804 10107854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10107964 10108134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10109631 10109707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10109913 10110020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10110123 10110246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10110324 10110402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10110485 10110614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10110697 10110866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10110945 10111165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGGACAGTCAGGGAGGTCCCGGCACCAGAAGCGCGCCCGCGCCCAGGCGCAGCTCCGCAACCTCGAGG
CCTATGCCGCGAACCCGCACTCGTTCGTGTTCACGCGAGGCTGCACGGGTCGCAACATCCGGCAGCTCAG
CCTGGACGTGCGGCGGGTCATGGAGCCGCTCACTGCCAGCCGTCTGCAGGTTCGTAAGAAGAACTCGCTG
AAGGACTGCGTGGCAGTGGCTGGGCCCCTCGGGGTCACACACTTTCTGATCCTGAGCAAAACAGAGACCA
ATGTCTACTTTAAGCTGATGCGCCTCCCAGGAGGCCCCACCTTGACCTTCCAGGTCAAGAAGTACTCGCT
GGTGCGTGATGTGGTCTCCTCACTGCGCCGGCACCGCATGCACGAGCAGCAGTTTGCCCACCCACCCCTC
CTGGTACTCAACAGCTTTGGCCCCCATGGTATGCATGTGAAGCTCATGGCCACCATGTTCCAGAACCTGT
TCCCCTCCATCAACGTGCACAAGGTGAACCTGAACACCATCAAGCGCTGCCTCCTCATCGACTACAACCC
CGACTCCCAGGAGCTGGACTTCCGCCACTATAGCATCAAAGTTGTTCCTGTGGGCGCGAGTCGCGGGATG
AAGAAGCTGCTCCAGGAGAAGTTCCCCAACATGAGCCGCCTGCAGGACATCAGCGAGCTGCTGGCCACGG
GCGCGGGGCTGTCGGAGAGCGAGGCAGAGCCTGACGGCGACCACAACATCACAGAGCTGCCTCAGGCTGT
CGCTGGCCGTGGCAACATGCGGGCCCAGCAGAGTGCAGTGCGGCTCACCGAGATCGGCCCGCGGATGACA
CTGCAGCTCATCAAGGTCCAGGAGGGCGTCGGGGAGGGCAAAGTGATGTTCCACAGTTTTGTGAGCAAGA
CGGAGGAGGAGCTGCAGGCCATCCTGGAAGCCAAGGAGAAGAAGCTGCGGCTGAAGGCGCAGAGGCAGGC
CCAGCAGGCCCAGAATGTGCAGCGCAAGCAGGAGCAGCGGGAGGCCCACAGAAAGAAGAGCCTGGAGGGC
ATGAAGAAGGCACGGGTCGGGGGTAGTGATGAAGAGGCCTCTGGGATCCCTTCAAGGACGGCGAGCCTGG
AGTTGGGTGAGGACGATGATGAACAGGAAGATGATGACATCGAGTATTTCTGCCAGGCGGTGGGCGAGGC
GCCCAGTGAGGACCTGTTCCCCGAGGCCAAGCAGAAACGGCTTGCCAAGTCTCCAGGGCGGAAGCGGAAG
CGGTGGGAAATGGATCGAGGCAGGGGTCGCCTTTGTGACCAGAAGTTTCCCAAGACCAAGGACAAGTCCC
AGGGAGCCCAGGCCAGGCGGGGGCCCAGAGGGGCTTCCCGGGATGGTGGGCGAGGCCGGGGCCGGGGCCG
CCCAGGGAAGAGAGTGGCCTGA

Translation (473 aa):
MGQSGRSRHQKRARAQAQLRNLEAYAANPHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSL
KDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPL
LVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASRGM
KKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSAVRLTEIGPRMT
LQLIKVQEGVGEGKVMFHSFVSKTEEELQAILEAKEKKLRLKAQRQAQQAQNVQRKQEQREAHRKKSLEG
MKKARVGGSDEEASGIPSRTASLELGEDDDEQEDDDIEYFCQAVGEAPSEDLFPEAKQKRLAKSPGRKRK
RWEMDRGRGRLCDQKFPKTKDKSQGAQARRGPRGASRDGGRGRGRGRPGKRVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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