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Report for CCDS1215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1215.1 Public Homo sapiens 1 ARHGAP30 24 110 108 CCDS HistoryNCBI Gene:257106Re-query CCDS DB by CCDS ID:1215.1Re-query CCDS DB by GeneID:257106See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1215.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368016.7 ENSP00000356995.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368016.7Link to Ensembl Protein Viewer:ENSP00000356995.3Re-query CCDS DB by Nucleotide ID:ENST00000368016Re-query CCDS DB by Protein ID:ENSP00000356995
Original member Current member NCBI NM_181720.3 NP_859071.2 Accepted alive Link to Nucleotide Sequence:NM_181720.3Link to Protein Sequence:NP_859071.2Re-query CCDS DB by Nucleotide ID:NM_181720Re-query CCDS DB by Protein ID:NP_859071Link to BLAST:NP_859071.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859071.2 890 Q7Z6I6-2 890 99.8876% 0 1

Chromosomal Locations for CCDS 1215.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161047715 161048355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161048989 161049334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161049424 161049689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161051314 161051715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161052286 161052363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161052440 161052543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161052626 161052797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161053258 161053385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161054366 161054473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161054623 161054705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161056388 161056532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161059614 161059716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161069528 161069624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2673 nt):
ATGAAGTCTCGGCAGAAAGGAAAGAAGAAGGGCAGCGCAAAGGAGCGGGTTTTTGGGTGCGACTTGCAGG
AGCACCTGCAGCACTCAGGCCAGGAGGTGCCCCAGGTGCTAAAGAGCTGTGCAGAATTTGTGGAGGAGTA
TGGAGTGGTGGATGGGATCTACCGCCTCTCAGGGGTCTCCTCCAACATCCAGAAGCTTCGGCAGGAATTT
GAGTCAGAGCGGAAGCCAGACCTGCGTCGGGATGTTTACCTCCAAGACATTCACTGCGTCTCCTCCCTGT
GCAAGGCCTATTTCAGAGAACTGCCGGATCCCCTGCTCACTTACCGGCTCTATGACAAGTTTGCTGAGGC
TGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCA
AACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGACCAACA
TGCATGCTCGCAACCTGGCCATCGTGTGGGCTCCCAACCTGCTGAGGTCTAAGGACATAGAGGCCTCAGG
CTTCAATGGGACAGCGGCCTTCATGGAGGTGCGGGTACAATCCATCGTCGTGGAGTTCATCCTCACACAC
GTGGACCAGCTCTTTGGGGGTGCTGCCCTCTCTGGTGGTGAGGTGGAGAGTGGGTGGCGATCGCTTCCAG
GGACCCGGGCATCAGGCAGCCCCGAGGACCTTATGCCCAGGCCACTGCCTTATCACCTGCCTAGCATACT
GCAGGCTGGCGATGGACCCCCACAGATGCGGCCCTACCATACTATCATCGAGATTGCAGAGCACAAGAGG
AAGGGGTCTTTGAAGGTCAGGAAGTGGAGGTCTATCTTCAATTTAGGTCGCTCTGGCCATGAGACTAAGC
GTAAACTTCCACGGGGGGCTGAGGACAGGGAGGATAAATCCAACAAGGGGACACTGCGGCCAGCCAAAAG
CATGGACTCACTGAGTGCTGCAGCTGGGGCCAGTGATGAGCCAGAGGGGCTGGTGGGGCCCAGCAGCCCC
CGGCCAAGCCCATTGCTGCCTGAGAGCTTGGAGAACGATTCTATAGAGGCAGCAGAGGGTGAACAGGAGC
CTGAGGCAGAAGCACTGGGTGGCACAAACTCTGAACCAGGCACACCACGAGCTGGGCGGTCAGCCATCCG
GGCTGGGGGCAGCAGCCGTGCAGAACGCTGTGCTGGTGTCCACATCTCAGACCCCTACAATGTCAACCTC
CCGCTACACATCACCTCTATCCTCAGTGTGCCCCCGAACATCATCTCTAACGTTTCCTTGGCCAGGCTCA
CCCGTGGCCTTGAGTGCCCTGCTCTACAGCACCGGCCAAGCCCTGCCTCTGGCCCTGGCCCTGGCCCTGG
CCTTGGCCCTGGCCCCCCAGATGAAAAGTTGGAAGCAAGTCCAGCCTCAAGTCCCCTGGCAGACTCAGGC
CCAGACGACTTGGCTCCTGCCCTGGAGGACTCGCTGTCCCAGGAGGTGCAGGACTCCTTCTCCTTCCTAG
AGGACTCAAGCAGCTCAGAACCTGAGTGGGTGGGGGCAGAGGATGGGGAGGTGGCCCAGGCAGAAGCAGC
AGGAGCAGCCTTCTCCCCTGGGGAGGACGACCCTGGGATGGGCTACCTGGAGGAGCTCCTGGGAGTTGGG
CCTCAGGTGGAGGAGTTCTCTGTGGAGCCACCCCTGGATGACCTGTCTCTGGATGAGGCACAGTTTGTCT
TGGCCCCCAGCTGCTGTTCCCTGGACTCCGCTGGCCCCAGGCCTGAAGTTGAGGAGGAAAATGGGGAGGA
AGTTTTCCTGAGTGCCTATGATGACCTAAGTCCCCTTCTGGGACCTAAACCCCCAATCTGGAAGGGTTCA
GGGAGTCTGGAGGGAGAGGCAGCAGGATGTGGAAGGCAGGCTCTGGGACAGGGTGGGGAAGAGCAGGCAT
GCTGGGAAGTTGGGGAGGACAAGCAGGCTGAGCCTGGAGGCAGGCTAGACATCAGGGAAGAGGCAGAGGG
AACCCCACAGCCACCTCAGCCAGAGGAGATGGAGCCTGAGGGGCAGCCCAGTCCAGACGGCTGTCTATGC
CCCTGTTCTCTTGGCCTGGGTGGCGTGGGCATGCGTCTAGCTTCCACTCTGGTTCAGGTCCAACAGGTCC
GCTCTGTGCCTGTGGTGCCCCCCAAGCCACAGTTTGCCAAGATGCCCAGTGCAATGTGTAGCAAGATTCA
TGTGGCACCTGCAAATCCATGCCCGAGGCCTGGCCGGCTTGATGGGACTCCTGGAGAAAGGGCTTGGGGG
TCCCGAGCTTCTCGATCCTCTTGGAGGAATGGGGGTAGTCTTTCCTTTGATGCTGCTGTGGCCCTAGCCC
GGGACCGCCAAAGGACTGAGGCTCAAGGAGTTCGGCGAACCCAGACCTGTACTGAGGGTGGGGATTACTG
CCTCATCCCCAGAACCTCCCCTTGTAGCATGATCTCTGCCCATTCTCCTCGGCCCCTTAGCTGCCTGGAG
CTCCCATCTGAAGGTGCAGAAGGGTCTGGATCCCGGAGTCGTCTTAGTCTGCCCCCCAGAGAACCCCAGG
TTCCTGACCCCCTGTTGTCCTCTCAGCGCAGGTCATATGCATTTGAAACACAGGCTAACCCTGGGAAAGG
TGAAGGACTGTGA

Translation (890 aa):
MKSRQKGKKKGSAKERVFGCDLQEHLQHSGQEVPQVLKSCAEFVEEYGVVDGIYRLSGVSSNIQKLRQEF
ESERKPDLRRDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEVLRELPVP
NYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEASGFNGTAAFMEVRVQSIVVEFILTH
VDQLFGGAALSGGEVESGWRSLPGTRASGSPEDLMPRPLPYHLPSILQAGDGPPQMRPYHTIIEIAEHKR
KGSLKVRKWRSIFNLGRSGHETKRKLPRGAEDREDKSNKGTLRPAKSMDSLSAAAGASDEPEGLVGPSSP
RPSPLLPESLENDSIEAAEGEQEPEAEALGGTNSEPGTPRAGRSAIRAGGSSRAERCAGVHISDPYNVNL
PLHITSILSVPPNIISNVSLARLTRGLECPALQHRPSPASGPGPGPGLGPGPPDEKLEASPASSPLADSG
PDDLAPALEDSLSQEVQDSFSFLEDSSSSEPEWVGAEDGEVAQAEAAGAAFSPGEDDPGMGYLEELLGVG
PQVEEFSVEPPLDDLSLDEAQFVLAPSCCSLDSAGPRPEVEEENGEEVFLSAYDDLSPLLGPKPPIWKGS
GSLEGEAAGCGRQALGQGGEEQACWEVGEDKQAEPGGRLDIREEAEGTPQPPQPEEMEPEGQPSPDGCLC
PCSLGLGGVGMRLASTLVQVQQVRSVPVVPPKPQFAKMPSAMCSKIHVAPANPCPRPGRLDGTPGERAWG
SRASRSSWRNGGSLSFDAAVALARDRQRTEAQGVRRTQTCTEGGDYCLIPRTSPCSMISAHSPRPLSCLE
LPSEGAEGSGSRSRLSLPPREPQVPDPLLSSQRRSYAFETQANPGKGEGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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