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Report for CCDS12132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12132.1 Public Homo sapiens 19 TNFAIP8L1 24 110 108 CCDS HistoryNCBI Gene:126282Re-query CCDS DB by CCDS ID:12132.1Re-query CCDS DB by GeneID:126282See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12132.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327473.9 ENSP00000331827.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327473.9Link to Ensembl Protein Viewer:ENSP00000331827.3Re-query CCDS DB by Nucleotide ID:ENST00000327473Re-query CCDS DB by Protein ID:ENSP00000331827
Original member Current member EBI ENST00000536716.1 ENSP00000444215.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536716.1Link to Ensembl Protein Viewer:ENSP00000444215.1Re-query CCDS DB by Nucleotide ID:ENST00000536716Re-query CCDS DB by Protein ID:ENSP00000444215
Original member Current member NCBI NM_001167942.1 NP_001161414.1 Accepted alive Link to Nucleotide Sequence:NM_001167942.1Link to Protein Sequence:NP_001161414.1Re-query CCDS DB by Nucleotide ID:NM_001167942Re-query CCDS DB by Protein ID:NP_001161414Link to BLAST:NP_001161414.1
Original member Current member NCBI NM_152362.3 NP_689575.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152362.3Link to Protein Sequence:NP_689575.2Re-query CCDS DB by Nucleotide ID:NM_152362Re-query CCDS DB by Protein ID:NP_689575Link to BLAST:NP_689575.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161414.1 186 Q8WVP5 186 100% 0 0
NP_689575.2 186 Q8WVP5 186 100% 0 0

Chromosomal Locations for CCDS 12132.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4651870 4652430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGACACCTTCAGCACCAAGAGCCTGGCTCTGCAGGCGCAGAAGAAGCTCCTGAGTAAGATGGCGTCCA
AGGCAGTGGTGGCCGTGCTGGTGGATGACACCAGCAGTGAGGTGCTGGATGAGCTGTACCGCGCCACCAG
GGAGTTCACGCGCAGCCGCAAGGAGGCCCAGAAGATGCTCAAGAACCTGGTCAAGGTGGCCCTGAAGCTG
GGACTGCTGCTGCGTGGGGACCAGCTGGGCGGTGAGGAGCTGGCGCTGCTGCGGCGCTTCCGCCACCGGG
CGCGCTGCCTGGCCATGACGGCCGTCAGCTTCCACCAGGTGGACTTCACCTTCGACCGGCGCGTGCTGGC
CGCCGGGCTGCTCGAGTGCCGCGACCTGCTGCACCAGGCCGTGGGTCCCCACCTGACCGCCAAGTCCCAC
GGCCGCATCAACCACGTGTTCGGCCACCTAGCCGACTGCGACTTCCTGGCTGCGCTCTACGGCCCCGCCG
AGCCCTACCGCTCCCACCTGCGCAGGATCTGCGAGGGCCTGGGCCGGATGCTGGACGAGGGCAGCCTCTG
A

Translation (186 aa):
MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKMLKNLVKVALKL
GLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGLLECRDLLHQAVGPHLTAKSH
GRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRMLDEGSL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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