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Report for CCDS11578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11578.1 Public Homo sapiens 17 NME1 24 110 108 CCDS HistoryNCBI Gene:4830Re-query CCDS DB by CCDS ID:11578.1Re-query CCDS DB by GeneID:4830See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000013034.3 ENSP00000013034.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000013034.3Link to Ensembl Protein Viewer:ENSP00000013034.3Re-query CCDS DB by Nucleotide ID:ENST00000013034Re-query CCDS DB by Protein ID:ENSP00000013034
Original member Current member EBI ENST00000336097.7 ENSP00000337060.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336097.7Link to Ensembl Protein Viewer:ENSP00000337060.3Re-query CCDS DB by Nucleotide ID:ENST00000336097Re-query CCDS DB by Protein ID:ENSP00000337060
Original member Current member NCBI NM_198175.1 NP_937818.1 Accepted alive Link to Nucleotide Sequence:NM_198175.1Link to Protein Sequence:NP_937818.1Re-query CCDS DB by Nucleotide ID:NM_198175Re-query CCDS DB by Protein ID:NP_937818Link to BLAST:NP_937818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937818.1 177 P15531-2 177 100% 0 0

Chromosomal Locations for CCDS 11578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 51154374 51154444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51155651 51155780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51159980 51160081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51161160 51161272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51161728 51161845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGTGCTACTGTCTACTTTAGGGATCGTCTTTCAAGGCGAGGGGCCTCCTATCTCAAGCTGTGATACAG
G
A
ACCATGGCCAACTGTGAGCGTACCTTCATTGCGATCAAACCAGATGGGGTCCAGCGGGGTCTTGTGGG
A
GAGATTATCAAGCGTTTTGAGCAGAAAGGATTCCGCCTTGTTGGTCTGAAATTCATGCAAGCTTCCGAA
GAT
CTTCTCAAGGAACACTACGTTGACCTGAAGGACCGTCCATTCTTTGCCGGCCTGGTGAAATACATGC
AC
TCAGGGCCGGTAGTTGCCATGGTCTGGGAGGGGCTGAATGTGGTGAAGACGGGCCGAGTCATGCTCGG
G
GAGACCAACCCTGCAGACTCCAAGCCTGGGACCATCCGTGGAGACTTCTGCATACAAGTTGGCAGGAAC
ATT
ATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGTGGTTTCACCCTGAGGAAC
TG
GTAGATTACACGAGCTGTGCTCAGAACTGGATCTATGAATGA


Translation (177 aa):
MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE
D
LLKEHYVDLKDRPFFAGLVKYMHSGPVVAM
VWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRN
I
IHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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