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Report for CCDS10543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10543.1 Public Homo sapiens 16 NUBP1 24 110 108 CCDS HistoryNCBI Gene:4682Re-query CCDS DB by CCDS ID:10543.1Re-query CCDS DB by GeneID:4682See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10543.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283027.10 ENSP00000283027.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283027.10Link to Ensembl Protein Viewer:ENSP00000283027.5Re-query CCDS DB by Nucleotide ID:ENST00000283027Re-query CCDS DB by Protein ID:ENSP00000283027
Original member Current member NCBI NM_002484.4 NP_002475.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002484.4Link to Protein Sequence:NP_002475.2Re-query CCDS DB by Nucleotide ID:NM_002484Re-query CCDS DB by Protein ID:NP_002475Link to BLAST:NP_002475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002475.2 320 P53384-1 320 100% 0 0

Chromosomal Locations for CCDS 10543.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10743864 10743882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10743961 10744065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10747143 10747276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10752610 10752678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10755721 10755753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10756690 10756780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10757873 10758027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10761364 10761474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10761757 10761859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10767949 10768032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10769047 10769105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGAGGAGGTGCCTCACGACTGTCCAGGGGCCGACAGCGCCCAGGCGGGCAGAGGGGCTTCATGTCAGG
GATGCCCCAACCAGCGGCTGTGCGCTTCTGGAGCGGGGGCCACTCCGGACACGGCTATAGAGGAAATCAA
AGAGAAAATGAAGACTGTAAAACACAAAATCTTGGTATTGTCTGGGAAAGGCGGTGTTGGGAAAAGCACA
TTCAGCGCCCACCTTGCCCATGGCCTAGCAGAGGATGAAAACACACAGATTGCTCTTCTAGACATCGATA
TATGTGGGCCATCGATTCCCAAGATAATGGGATTGGAAGGAGAGCAGGTTCACCAGAGTGGCTCAGGCTG
GTCTCCAGTGTACGTGGAAGACAACCTGGGGGTGATGTCAGTGGGCTTCCTGCTCAGCAGTCCTGATGAT
GCTGTTATCTGGAGGGGACCCAAGAAAAACGGCATGATCAAGCAGTTCCTCCGAGATGTGGACTGGGGAG
AGGTCGACTACCTCATTGTGGACACCCCACCTGGGACGTCGGATGAACACCTCTCGGTCGTCCGGTACCT
GGCCACAGCACACATCGATGGAGCAGTGATCATCACCACTCCCCAGGAGGTGTCACTCCAGGATGTCCGG
AAAGAAATCAACTTCTGCCGCAAGGTGAAGCTGCCCATCATCGGGGTGGTGGAGAACATGAGTGGCTTCA
TCTGTCCTAAGTGCAAGAAAGAATCTCAGATATTCCCTCCCACAACCGGGGGCGCGGAGCTCATGTGCCA
GGACTTGGAGGTCCCTCTCCTCGGCAGAGTGCCCCTGGATCCGCTCATAGGTAAGAATTGTGACAAAGGC
CAGTCTTTTTTCATTGACGCCCCAGATTCCCCAGCCACGTTAGCCTACAGAAGTATAATTCAGAGAATCC
AAGAGTTTTGTAATCTCCATCAGTCAAAAGAAGAGAACCTCATCAGTTCCTGA

Translation (320 aa):
MEEVPHDCPGADSAQAGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKST
FSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDD
AVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVR
KEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKG
QSFFIDAPDSPATLAYRSIIQRIQEFCNLHQSKEENLISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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