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Report for CCDS10143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10143.1 Public Homo sapiens 15 LYSMD2 24 110 108 CCDS HistoryNCBI Gene:256586Re-query CCDS DB by CCDS ID:10143.1Re-query CCDS DB by GeneID:256586See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267838.7 ENSP00000267838.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267838.7Link to Ensembl Protein Viewer:ENSP00000267838.3Re-query CCDS DB by Nucleotide ID:ENST00000267838Re-query CCDS DB by Protein ID:ENSP00000267838
Original member Current member NCBI NM_153374.3 NP_699205.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153374.3Link to Protein Sequence:NP_699205.1Re-query CCDS DB by Nucleotide ID:NM_153374Re-query CCDS DB by Protein ID:NP_699205Link to BLAST:NP_699205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699205.1 215 Q8IV50-1 215 100% 0 0

Chromosomal Locations for CCDS 10143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 51723607 51723649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51724790 51725121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51737350 51737622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCGGATTCCTCGCCCGCACTGTCCCTGCGGGAAGGCGGCCCCCGCGCGCCGCGGCCCTCGGCCCCCT
CGCCGCCGCCGCGCTCGCGCTCCGGCTCCGAGTCCGAGGAGGCCGAGCTGTCGCTGAGCCTGGCCCGCAC
CAAGACCCGCTCGTACGGCAGCACCGCCAGCGTGCGGGCGCCGCTGGGCGCCGGCGTCATCGAGCGCCAT
GTGGAGCACCGGGTCCGCGCGGGCGACACGCTGCAGGGCATCGCGCTCAAGTACGGTGTCACGATGGAAC
AGATTAAAAGGGCCAATAAACTGTTTACCAATGATTGTATATTTCTGAAGAAAACTTTGAACATCCCAGT
TATATCAGAGAAGCCTTTGTTGTTTAATGGACTTAACTCCATTGATTCTCCAGAAAATGAAACTGCTGAT
AACAGTTTTTCTCAGGAAGAGGAGCCAGTGGTGGCCGGGGAAGACCTCCCTCCTCCCAGTCCTCAAGAAT
CTGATGTTCAGCCTGTGCAGCCTGAGGAAGTGTCAGCCAGAGATTTCCTGCAGAGACTTGACTTGCAGAT
TAAGTTATCAACACAGGCAGCCAAGAAGCTAAAAGAAGAGAGCAGAGATGAAGAAAGTCCCTATGCAACT
TCCCTCTATCACAGTTAG

Translation (215 aa):
MADSSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRAPLGAGVIERH
VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETAD
NSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYAT
SLYHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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