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Report for CCDS7938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7938.1 Public Homo sapiens 11 CELF1 24 110 108 CCDS HistoryNCBI Gene:10658Re-query CCDS DB by CCDS ID:7938.1Re-query CCDS DB by GeneID:10658See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310513.10 ENSP00000308386.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310513.10Link to Ensembl Protein Viewer:ENSP00000308386.5Re-query CCDS DB by Nucleotide ID:ENST00000310513Re-query CCDS DB by Protein ID:ENSP00000308386
Original member Current member NCBI NM_001376442.1 NP_001363371.1 Accepted alive Link to Nucleotide Sequence:NM_001376442.1Link to Protein Sequence:NP_001363371.1Re-query CCDS DB by Nucleotide ID:NM_001376442Re-query CCDS DB by Protein ID:NP_001363371Link to BLAST:NP_001363371.1
Original member Current member NCBI NM_001376443.1 NP_001363372.1 Accepted alive Link to Nucleotide Sequence:NM_001376443.1Link to Protein Sequence:NP_001363372.1Re-query CCDS DB by Nucleotide ID:NM_001376443Re-query CCDS DB by Protein ID:NP_001363372Link to BLAST:NP_001363372.1
Original member Current member NCBI NM_001376444.1 NP_001363373.1 Accepted alive Link to Nucleotide Sequence:NM_001376444.1Link to Protein Sequence:NP_001363373.1Re-query CCDS DB by Nucleotide ID:NM_001376444Re-query CCDS DB by Protein ID:NP_001363373Link to BLAST:NP_001363373.1
Original member Current member NCBI NM_001376445.1 NP_001363374.1 Accepted alive Link to Nucleotide Sequence:NM_001376445.1Link to Protein Sequence:NP_001363374.1Re-query CCDS DB by Nucleotide ID:NM_001376445Re-query CCDS DB by Protein ID:NP_001363374Link to BLAST:NP_001363374.1
Original member Current member NCBI NM_001376446.1 NP_001363375.1 Accepted alive Link to Nucleotide Sequence:NM_001376446.1Link to Protein Sequence:NP_001363375.1Re-query CCDS DB by Nucleotide ID:NM_001376446Re-query CCDS DB by Protein ID:NP_001363375Link to BLAST:NP_001363375.1
Original member Current member NCBI NM_001376448.1 NP_001363377.1 Accepted alive Link to Nucleotide Sequence:NM_001376448.1Link to Protein Sequence:NP_001363377.1Re-query CCDS DB by Nucleotide ID:NM_001376448Re-query CCDS DB by Protein ID:NP_001363377Link to BLAST:NP_001363377.1
Original member Current member NCBI NM_001376449.1 NP_001363378.1 Accepted alive Link to Nucleotide Sequence:NM_001376449.1Link to Protein Sequence:NP_001363378.1Re-query CCDS DB by Nucleotide ID:NM_001376449Re-query CCDS DB by Protein ID:NP_001363378Link to BLAST:NP_001363378.1
Original member Current member NCBI NM_006560.4 NP_006551.1 Accepted alive Link to Nucleotide Sequence:NM_006560.4Link to Protein Sequence:NP_006551.1Re-query CCDS DB by Nucleotide ID:NM_006560Re-query CCDS DB by Protein ID:NP_006551Link to BLAST:NP_006551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363371.1 482 Q92879-2 482 100% 0 0
NP_001363372.1 482 Q92879-2 482 100% 0 0
NP_001363373.1 482 Q92879-2 482 100% 0 0
NP_001363374.1 482 Q92879-2 482 100% 0 0
NP_001363375.1 482 Q92879-2 482 100% 0 0
NP_001363377.1 482 Q92879-2 482 100% 0 0
NP_001363378.1 482 Q92879-2 482 100% 0 0
NP_006551.1 482 Q92879-2 482 100% 0 0

Chromosomal Locations for CCDS 7938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47472230 47472357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47473088 47473231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47475336 47475521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47476846 47476956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47477297 47477425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47478877 47478940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47482695 47482856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47483453 47483532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47484389 47484523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47486750 47486798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47487159 47487241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47488837 47489014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGCTATCAAGATGTTTGTGGGCCAGGTTC
CAAGGACCTGGTCTGAAAAGGACTTGCGGGAACTCTTCGAACAGTATGGTGCTGTGTATGAAATCAACGT
CCTAAGGGATAGGAGCCAAAACCCGCCTCAGAGCAAAGGGTGCTGTTTTGTTACATTTTACACCCGTAAA
GCTGCATTAGAAGCTCAGAATGCTCTTCACAACATGAAAGTCCTCCCAGGGATGCATCACCCTATACAGA
TGAAACCTGCTGACAGTGAGAAGAACAATGCAGTGGAAGACAGGAAGCTGTTTATTGGTATGATTTCCAA
GAAGTGCACTGAAAATGACATCCGAGTCATGTTCTCTTCGTTTGGACAGATTGAAGAATGCCGGATATTG
CGGGGACCTGATGGCCTGAGCCGAGGTTGTGCATTTGTGACTTTTACAACAAGAGCCATGGCACAGACGG
CTATCAAGGCAATGCACCAAGCACAGACCATGGAGGGTTGCTCATCACCCATGGTGGTAAAATTTGCTGA
TACACAGAAGGACAAAGAACAGAAGAGAATGGCCCAGCAGCTCCAGCAGCAGATGCAGCAAATCAGCGCA
GCATCTGTGTGGGGAAACCTTGCTGGTCTAAATACTCTTGGACCCCAGTATTTAGCACTCCTTCAGCAGA
CTGCCTCCTCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGGTTGAATGCAATGCAGTT
ACAGAATTTGGCTGCACTAGCTGCTGCAGCTAGTGCAGCTCAGAACACACCAAGTGGTACCAATGCTCTC
ACTACATCCAGCAGTCCCCTCAGCGTGCTCACTAGTTCAGGGTCCTCACCTAGCTCTAGCAGCAGTAATT
CTGTCAACCCCATAGCCTCACTTGGAGCCCTGCAGACATTAGCTGGAGCAACGGCTGGCCTCAATGTTGG
CTCTTTGGCAGGAATGGCTGCTTTAAATGGTGGCCTGGGCAGCAGTGGCCTTTCCAATGGCACCGGGAGC
ACCATGGAGGCCCTCACTCAGGCCTACTCGGGTATCCAGCAATATGCTGCTGCTGCGCTCCCCACTCTGT
ACAACCAGAATCTTCTGACACAGCAGAGTATTGGTGCTGCTGGAAGCCAGAAGGAAGGTCCAGAGGGAGC
CAACCTGTTCATCTACCACCTGCCCCAGGAGTTTGGTGATCAGGACCTGCTGCAGATGTTTATGCCCTTT
GGGAATGTCGTGTCTGCCAAGGTTTTCATAGACAAGCAGACAAACCTGAGCAAGTGTTTTGGTTTTGTAA
GTTACGACAATCCTGTTTCGGCCCAAGCTGCCATCCAGTCCATGAACGGCTTTCAGATTGGCATGAAGCG
GCTTAAAGTGCAGCTCAAACGTTCGAAGAATGACAGCAAGCCCTACTGA

Translation (482 aa):
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK
AALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL
RGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISA
ASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNAL
TTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGS
TMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPF
GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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