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Report for CCDS56747.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
56747.1 |
Public |
Mus musculus |
10 |
Otogl |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:628870](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:56747.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:628870](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 10 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68
Review status: Reviewed (by RefSeq and Havana)
Attributes |
CDS uses downstream AUG |
Inferred exon combination |
Sequence IDs included in CCDS 56747.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000165341.4 |
ENSMUSP00000129467.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000165341.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000129467.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000165341](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000129467](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001177567.2 |
NP_001171038.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001177567.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001171038.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001177567](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001171038](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001171038.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001171038.1 |
2325 |
F7A4A7-1 |
2325 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 56747.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6978 nt): ATGGTACCTTGGCGTGCTCTCTCCCTTCCTATACTGCTGGTTTCATTACGAGGATACGTTTGTGCGTCAT CTGTCCTGTCAGAAACATCAGAAAGTGAGTTCTATGAAAATGAACAGAGAAGGGCTCTGTTAGCAGTACA GTTTGAAGCAACCTCTCCGAGATATTTTTTCCACGAAGCTATTAATTGGGGTGAGAGTAAAATAAAAGGT TCATGTCCTCATGAATGCCTTAACGGGGCTTTCTGTTCTAAGACGGGTACGTGTGACTGTCAAATATTCC AGGCTCTCGGGACAAGGTGCCAGATTGTGCCAAACATGGGAAGTGGCAGAGATGGGATTTGCAAAACCTG GGGACAGTATCACTTTGAAACATTTGATGGAATCTACTATTATTTCCCAGGAAGTTGTTCTTATATATTT GCAAAGGACTGTGGTAATTTGGAGCCTCAGTACACAGTATGGGTCCATAATAGCCCAAAGTGCCTTGGTT CCGTGTATTCTTGTTACCGCTCCATCAGCTTATTTTTTTCAAACCAAGAGGAAATTAGAATCTATGGACA TGAAATAAGAAAAAATGGGATCAGTTTATCTCTGCCTCAGACACTTGGGCAGGTGCACTTAGAGAAGGTA GCTGACTACATTCTGGTGAAGACGACCTTTGGATTTTCTTTGGCTTGGGATGGAATATCGGGAATTTACC TCAAACTCTCGGAGGAGCACAGAGGGAAATCATGTGGCTTGTGTGCAAATTATAATGGCATCCAGTCAGA CGACTTTGTGATCCTGCAAGAGGACTACACAGAAGACATTGCTATGTTTGCAAATAGCTGGCTGGTGCTA ACTCCAGATGATACTAAATGTGTACCTACGCCCTCAGACTTTCCAAATCCATGTTCCAGTGGAATGCCAG CATTTGAGGCAATCTTCTTCAAATGCCAGATATTGTTACAGTTCCCCTTTCTGAGCTGCCACGAATACAT TGATCCATACTTATACATTGCCAGCTGTGTTAATGACCTGTGCAAAACTGATGACGATGAAACTTACTGT CGAGCAGCCACAGAGTACGCTAGAGCCTGTTCCCACGCCGGCTTCCCCATTCAAGACTGGAGGGATGACT TTCCAGCATGCACTGATAAATGTGACGATAGCTTCGTCCACCGGGACTGTATCAGTTGTTGCCCTCCGAG CTGCACATTTGAGAAGCAGTGTCTTGGGAGCAATCTTCACTGCCTTGATGGATGCTATTGTGCAGACGGC CTCATAATGGACAATGGAACTTGCATCTCTTTGGAGAGCTGCCCTTGTAGTTTTCACGGATTAGCTTATT CAGTTGGTTCAAAAATCGAACAAGAGTGCACTGAATGTGTATGTGTTGGTGGAGTTTGGAACTGCACCGA ACATGACTGTCCAGTTCAGTGTTCTGTTGTGGGTGACTCTCATTTCACCACCTTTGATGGGCGTCATTAC TCTTTTATTGGCTTGTGTCAGTACATCCTTGTGAAAGGAACTGGAAAAGATAGATTCACGATCACTTTGC AGAAGGCTCACTGTGAACAGAACCTGGGTTTGGTCTGCCTTCAGTCCATAACTCTAATACTGGAGGATGA CTTTAACAAACAAGTGACGCTCAGCAGAGGAGGCCAGATTGTCACCAGTCCCAACCAAGGCTTCACCCTG AACGGCATTGTTGAAATTCAAACCCTGTCATCCTTATTCATTCTCCTAAGAACCACCTTTGGTTTAAAGA TCTTGTTCGCTATTGATGGAGAAAGAATTTACATTCAGCTTTCCAGTGCCTGGAAAAGAAGGACATTAGG TCTGTGCGGCACCTTTAATGGCAACATTAGGGATGATTTTCTTTCTCCATCAGGCATGATCGAAGGAACC CCACAGCTCCACGCACATGCGTGGAGAGTCTCCTCCACGTGTTTCGCGCCTGTCCATGTCCCGATGGTGG ATCCCTGCAATATTAACCAACAGAACATTGGGTATGCAGCACACTGTGATGTCATCCACCAGGAGCTCTT TGCTCCTTGCCATGTCTACGTCAGTCCCGGGCTGTACTACCAGTTGTGTCGCCACGATGCCTGCAAATGT GGGAGCCCCTGCCTGTGTAACGCTCTCGCCCACTACGCCTACCTGTGTGGTCAGCGTGGTGTGCCCATTG ATTTCAGAGCTCACATCTCCTTCTGTGCTGTGGTGTGTCAGAAGGGCATGCTGTACCACCACTGCTCGTC ACTCTGCCTCCGCTCCTGCACCTCTCTCTCCTCCCCTGAGCAGTGCAAAGACGACTGTGCTGAAGGGTGC AACTGTCCTGAAGGCAAATTCTATGAAGAGACACTTAACTTTTGTGTGCCCATATATCACTGCCGGTGTC ATTATAGGGGGAGCATTTACCAGCCAGGGGAGCTCATTCCAACCCCCTCAGGCTTATGCCAGTGTTCAAA TGGGACTGTGAAATGTGATGAGCTAGCAACACCCTCTACTGTCCACGCCTGCCCAGAAGGGAAGGAATAT TTTGACTGCAGGTTTCCTGACCCTGCGTTACCAGCTGGTGGTATAAACTGCGAGACGACGTGCGCAAACC TGGCCATGAACTTCACCTGTGCTCCATCCTCGCCTTGCATCAGTGGCTGCGTTTGTGCTGCAGGAATGGC AGAACACAAAGGAAAATGCTATGTTCCCGAAAGCTGTCCCTGCATCTGGAAGGACTGGGAGTACAGCTCA GGGGAGGTCATCTCTACACCGTGTTACACCTGTGTTTGTCGGCGGGGGATGTTCAATTGCACATATTATC CATGTCCTGCAGTATGCACAGTATATGGGGACCGGCATTATCACTCCTTTGATGGATTGGAATATGACTA TATCAGCGATTGCCAAGTGTTTTTGATAAAGAGTACAGACGATTCTGATATATCTGTGATTTCCCAAAAC AAGAAATGCTTTGACAATGATATTGTTTGTTCTAAAAGTGTTTTGATATCAATTGGAGACACTGAAATAT ACCTCAATGATGCTCCTTACAAACAGAAGCGATCAGGGTTTTTCCTGGAAAGCAGACCTGAGTACCAGCT CTGGAAGGCTGGGTTCTACATAGTAATATACTTCCCGGAGGAAGATATCACCATTCTGTGGGATGAGAAG ACAACCATCCACATCAAAGTCGGGCCACAGTGGAAGAACAAGCTGGCAGGATTGTGTGGTAACTTTGACA AATGTACTTCCAATGACATGACAACATCTAATAACATTGAAGTGCGAAATGCTCAGGTGTTTGGAGACAG CTGGGCCTTAGGACAGTGTGAAGATCTTATGGAGGCCCTGAAGCCCTGCGAGGCACACCAAAACAAATTT CCCTATGCCAAGAGAGAATGTTCCATTTTGTACAGTGATGTTTTTGCTCCTTGTCGCAATGTGATTGACG TCACCTCTTTTGCCAAGAACTGCCATGAAGACACGTGTAACTGTAACCTGGGTGGGGACTGTGAATGCCT ATGTACCAGTGTGGCCGCATACGCTTACAAATGCTGCCAGGAAGGGGTGCCTGTTCACTGGAGGTCACCC ACTGTCTGTGCCCTTGACTGTGAATATTATAATCAAGGGCTTGGGGAAGGACCTTATATGCTGGCAAGTT ATGGGCAAAGTGGCCTTGTTCTTGGTGCCAATATGACCAGTAGAAGCGTTTTCTCTTTGCCCAGAAGCAA CAATCGTGGTAATTTATTTTTTATTTTTATGATCACTCCGGGCCTTTTCAAAGAGAAGACATCCTCATTG GCTCTTGTTTCCTTGGAATCTGCTGAAAGGCCCAACTACTTTCTCTATGTCCACGACAATGACACTCTTA GCTTGAAGCTGTGGCGGGCAAACTCAGAATTTCATCAGAGAGCAACATTTTTCCACCACCAAGGCCTCTG GATTCCTGGCTACAGTGCATTCGAATTATACAGCAAGAAAGGCTACTTCATCGTTTTTATGGGTTCCAGT GTCAAAGCGTCAAAATACGATGACTCGGAAGAATTCAAGCAGTCAAGTAGCTTTAGCATAGAAGAAATCC AGGCAGTGGTCCCTTACAGGAGGATGTGCGAGTGGAGATACGAACCTTGTGCTACTCCGTGTTTTAAAAC ATGCAGTGATCCAGAGGCCTTAGCCTGTACATTCCTTCCACCGGTTGAAGGATGCTTGCCATATTGCCCC AAGAATATGATCCTGGATGAGACGACTCTTAAATGTGTTCACCCAGAAGACTGCATACCACTGTTTCCAA CAGAACCAGCATTGCCACCAGACATTACCCCATCAGACATGACACCGACCCCAGGTTTGGAATGCGAGCC TCAACAATTTGATCCTGTTTATAACTGTAGCCAATATATCTGCCTTAACATGGAGTGGACCTTCTACAAC TGGTCTCTGAATTGCCCGAAGGACTTGGAAATGCCCGACTGTGGGTTCCGAGGCTGGCCTGTTCAAGTGA ATACTGATATATGCTGTCCGGAGTGGGAATGCCCCTGTCGGTGCTCCATGTTGTCAGAGTTGAGCATCAT TACATTTGATGGGAACAGTGCAGCACTATCTAGTATGGCTTCTTACATCTTAGTAAGAGTCCCCGGGGAA ATTGTAGTTGTTCACATTGACAAATGTTCCATGAATCAGAATGGACATGCCCTTAAAAAACCAGCTTCTT TTGGACGAATCTCAGGACTTTGTTTTAAGAAGCTAAATGTGACAACATCTATACATAAAATACTTATCAA CAGAGTGGTAAGAAAGGTAGACGTGGATTCTATTGTTGTGCCTTTGCCCTTTTCAAGTCATGAGCTGTTC ATAGAAGATTCTGGAACAATGTATGTGATTACTACTCCTGCTGGCTTAATCATAAAGTGGGCTCACCTTA CAGGAATCATAGACATTCACTTCGGCCCCCAGTTTAACTTGTCATCTTACACAGAAGGGCTTTGTGGGAT TTGCAATGACAATCCAGATGATGACCTCAGGATGCAGAATGGCACCATCATTACCAACATGGAAGACATA GAGTTATTTATTGGCAGCTGGGAAATTGAGAAATCATTTGAAGTGACAATGAGAAGACCTGTGAGGAACT GTACTGAATATGACTGCAGTCATTGCATCGAGTTATTGAACAGAGAAGGTTTCATTCCATGCCATGACAA AGTCTCACCAAGGGACTTTTGTGAAAAAATGTGGATCAACTACACCTACTTCTGGAGCTACGAATGTGAT GCAATCTCTGCATATGTGGCTTTGTGCAACAAATTTGATATCTGCATTCAGTGGCGCACCCCTGACTATT GCCCTCTGAGTTGTCCAGAGGGAAAGGAATATCAGCCCTGTGTGAGACCATGTGAAGCAAGAACATGTCT CAACAAATGGTTCTATGGACACTCCTCATGTCTGAATTTGAGAGAAGACTGTGTGTGCAAGAATGGAACC ATTCTTCACCGGCCAGATAAAACACTATGCATCCCAGAGCAAGAATGTGTGTGCACTGACAGAGAGGAGC ACCCCCGCAGTGCTGGGGAGATTTGGAATGGTGGCATAGATGAATGCACCCTCTACAAATGTCTGGAGGA TGGAAACATTATTCCTATAGAGCCTGTCTGTGAAGAAGAGCCTTCCCCCATCTGTGAACGAACAGCTGAA GTGGTCATAGGCATTGTTGATAAGCTGACCTGCTGTTCTAAAAAAGTCTGTGGCTGTGACATGAGTTTGT GTGACAGGACCATCCCACCATGCACAAATAGCCAGAAGTTGATCGTTGGCTATAGTGCTCTTTCTTGTTG CCCACAGTATGAATGTGAATGTGATACGGTGAGATGTCCTGATATTTCAACGCCAGTTTGCAGAGATGAC CAGTTTGTGCTTCAAGTTCGACAGGGAGAGCCTTGCTGTTTCTACCCTTCCTGCGTTTGTAAGACATGCA CTGAACCAACTCCACAATGTACCGATGGGGAATTCCTCACTGTTAATATCAATACTACACATTTATGCTG TCCTCAGTACTACTGCGTTTGTGAGCCAGATCTTTGCCCTCCACCATCACTTGAGTGTGCAAAAGATATG AACCTGGTGAAAGAAAATGTATCTGGACAATGTTGCCCAAACTGGCGTTGCGAATGCAACTGTGAGACTC TTGTCATGCCAACCTGTGACGTGGGAGAATTTGCTGCAATAGATCAAAACTTTCAGACTGACTGTGGCTG TGTACAGTATCTCTGTGAAAAGGATGATGTGTGTGTGTTCCAAGAAGTATCAGTATTGAATCCTGGGCAA TCTCTAATAAAGTATTTAGAAGAGGAATTTTGTTATATAATCGAATGTCTGGATGAAAAAGATAACTATA CCGACTTTCATACTTTGAATGTTACAATGGTGAACTGTTCAAAAGACTGTGATGCTCACCAGATATACAT TCCATCCTCCAGTGATTATGATTGCTGTGGAACATGTAAAAATATATCCTGCAAATTTATTATGGAAAAT GGAACATCAGTTATATATGAGGAGGGGAGCACCTGGCACTATAACTGCAGCACGTACGAATGTGTTAACA CTGAGGAGGGAGCAACGATTCTAAACTACAGCATGGTTTGCCCTCCTTTTAATGAAACTGAATGCAAACT GAATGAAGGGATTGTGAAGCTTTATAATGAAGGCTGTTGCAAGATCTGCAAACGAGAAGAGCGAATATGC CAGAAAGTGATCATTAAATCCATCATAAAGAAACAGGACTGTGTAAGCCAAAGCTCTATTAGTGTGGCAT CTTGTGATGGGAAATGCCCGTCAGCTACCATATATAACATCAATGTTGAAAGTCACCTGAGGTTCTGCAA GTGCTGTCGTGAAAATGGAGTGCGAAACGTGACGGTGCCTCTGCACTGCTCAGGAAATGGCACTGAAGTA ATGTACACACTCCAGGAGCCGATAGACTGCACATGCCAGTGGAACTGA
Translation (2325 aa): MVPWRALSLPILLVSLRGYVCASSVLSETSESEFYENEQRRALLAVQFEATSPRYFFHEAINWGESKIKG SCPHECLNGAFCSKTGTCDCQIFQALGTRCQIVPNMGSGRDGICKTWGQYHFETFDGIYYYFPGSCSYIF AKDCGNLEPQYTVWVHNSPKCLGSVYSCYRSISLFFSNQEEIRIYGHEIRKNGISLSLPQTLGQVHLEKV ADYILVKTTFGFSLAWDGISGIYLKLSEEHRGKSCGLCANYNGIQSDDFVILQEDYTEDIAMFANSWLVL TPDDTKCVPTPSDFPNPCSSGMPAFEAIFFKCQILLQFPFLSCHEYIDPYLYIASCVNDLCKTDDDETYC RAATEYARACSHAGFPIQDWRDDFPACTDKCDDSFVHRDCISCCPPSCTFEKQCLGSNLHCLDGCYCADG LIMDNGTCISLESCPCSFHGLAYSVGSKIEQECTECVCVGGVWNCTEHDCPVQCSVVGDSHFTTFDGRHY SFIGLCQYILVKGTGKDRFTITLQKAHCEQNLGLVCLQSITLILEDDFNKQVTLSRGGQIVTSPNQGFTL NGIVEIQTLSSLFILLRTTFGLKILFAIDGERIYIQLSSAWKRRTLGLCGTFNGNIRDDFLSPSGMIEGT PQLHAHAWRVSSTCFAPVHVPMVDPCNINQQNIGYAAHCDVIHQELFAPCHVYVSPGLYYQLCRHDACKC GSPCLCNALAHYAYLCGQRGVPIDFRAHISFCAVVCQKGMLYHHCSSLCLRSCTSLSSPEQCKDDCAEGC NCPEGKFYEETLNFCVPIYHCRCHYRGSIYQPGELIPTPSGLCQCSNGTVKCDELATPSTVHACPEGKEY FDCRFPDPALPAGGINCETTCANLAMNFTCAPSSPCISGCVCAAGMAEHKGKCYVPESCPCIWKDWEYSS GEVISTPCYTCVCRRGMFNCTYYPCPAVCTVYGDRHYHSFDGLEYDYISDCQVFLIKSTDDSDISVISQN KKCFDNDIVCSKSVLISIGDTEIYLNDAPYKQKRSGFFLESRPEYQLWKAGFYIVIYFPEEDITILWDEK TTIHIKVGPQWKNKLAGLCGNFDKCTSNDMTTSNNIEVRNAQVFGDSWALGQCEDLMEALKPCEAHQNKF PYAKRECSILYSDVFAPCRNVIDVTSFAKNCHEDTCNCNLGGDCECLCTSVAAYAYKCCQEGVPVHWRSP TVCALDCEYYNQGLGEGPYMLASYGQSGLVLGANMTSRSVFSLPRSNNRGNLFFIFMITPGLFKEKTSSL ALVSLESAERPNYFLYVHDNDTLSLKLWRANSEFHQRATFFHHQGLWIPGYSAFELYSKKGYFIVFMGSS VKASKYDDSEEFKQSSSFSIEEIQAVVPYRRMCEWRYEPCATPCFKTCSDPEALACTFLPPVEGCLPYCP KNMILDETTLKCVHPEDCIPLFPTEPALPPDITPSDMTPTPGLECEPQQFDPVYNCSQYICLNMEWTFYN WSLNCPKDLEMPDCGFRGWPVQVNTDICCPEWECPCRCSMLSELSIITFDGNSAALSSMASYILVRVPGE IVVVHIDKCSMNQNGHALKKPASFGRISGLCFKKLNVTTSIHKILINRVVRKVDVDSIVVPLPFSSHELF IEDSGTMYVITTPAGLIIKWAHLTGIIDIHFGPQFNLSSYTEGLCGICNDNPDDDLRMQNGTIITNMEDI ELFIGSWEIEKSFEVTMRRPVRNCTEYDCSHCIELLNREGFIPCHDKVSPRDFCEKMWINYTYFWSYECD AISAYVALCNKFDICIQWRTPDYCPLSCPEGKEYQPCVRPCEARTCLNKWFYGHSSCLNLREDCVCKNGT ILHRPDKTLCIPEQECVCTDREEHPRSAGEIWNGGIDECTLYKCLEDGNIIPIEPVCEEEPSPICERTAE VVIGIVDKLTCCSKKVCGCDMSLCDRTIPPCTNSQKLIVGYSALSCCPQYECECDTVRCPDISTPVCRDD QFVLQVRQGEPCCFYPSCVCKTCTEPTPQCTDGEFLTVNINTTHLCCPQYYCVCEPDLCPPPSLECAKDM NLVKENVSGQCCPNWRCECNCETLVMPTCDVGEFAAIDQNFQTDCGCVQYLCEKDDVCVFQEVSVLNPGQ SLIKYLEEEFCYIIECLDEKDNYTDFHTLNVTMVNCSKDCDAHQIYIPSSSDYDCCGTCKNISCKFIMEN GTSVIYEEGSTWHYNCSTYECVNTEEGATILNYSMVCPPFNETECKLNEGIVKLYNEGCCKICKREERIC QKVIIKSIIKKQDCVSQSSISVASCDGKCPSATIYNINVESHLRFCKCCRENGVRNVTVPLHCSGNGTEV MYTLQEPIDCTCQWN
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