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Report for CCDS52834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52834.1 Public Mus musculus 9 Dennd4a 23 108 98 CCDS HistoryNCBI Gene:102442Re-query CCDS DB by CCDS ID:52834.1Re-query CCDS DB by GeneID:102442See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038890.5 ENSMUSP00000037915.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038890.5Link to Ensembl Protein Viewer:ENSMUSP00000037915.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038890Re-query CCDS DB by Protein ID:ENSMUSP00000037915
Original member NCBI NM_001162917.1 NP_001156389.1 Updated not alive Link to Nucleotide Sequence:NM_001162917.1Link to Protein Sequence:NP_001156389.1Re-query CCDS DB by Nucleotide ID:NM_001162917Re-query CCDS DB by Protein ID:NP_001156389
Current member NCBI NM_001162917.2 NP_001156389.1 Accepted alive Link to Nucleotide Sequence:NM_001162917.2Link to Protein Sequence:NP_001156389.1Re-query CCDS DB by Nucleotide ID:NM_001162917Re-query CCDS DB by Protein ID:NP_001156389Link to BLAST:NP_001156389.1

Chromosomal Locations for CCDS 52834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64838834 64839144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64842440 64842689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64849126 64849195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64851212 64851381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64852416 64852657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64857667 64857733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64859299 64859357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64861903 64862047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64862327 64862502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64867762 64867862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64871828 64872046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64872994 64873139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64886857 64886990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64888486 64888621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64888920 64889126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64889216 64889344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64889590 64889731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64893286 64893402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64894398 64894529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64896334 64897430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64904150 64904339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64906001 64906095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64906838 64907013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64907103 64907237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64909501 64909699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64909931 64910185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64911665 64911782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64911887 64911913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64912354 64912516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64912676 64912740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64916959 64917095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5610 nt):
ATGATTGAAGACAAGGGACCTCGTGTTGCTGACTACTTTGTTGTAGCAGGCTTAACTGACATTTCAAAGC
CTCTTGAAGAGGAAATTCACTTCAATGATGCCTGTCACAAAGTGGCAAAACCAAAAGAACCCATCACAGA
TGTTTCTGTTATCATCAAATCCCTTGGGGAGGAGGTGCCACGGGATTATGTGTGTATTGATGTTACCCCA
ACTGGATTATCAGCAGACCTTAATAATGGAAGTCTTGTGGGACCCCAGATTTACCTTTGCTATAAAAGAG
GAAGAGATAAACCTCCACTTACAGATCTGGGGGTACTATATGACTGGAAAGAGAGACTGAAGCAGGGCTG
TGAGATTATTCAGAGTACTCCCTATGGACGACCTGCCAATATTAGCGGCAGTACCTCATCACAAAGAATC
TACATCACTTACCGAAGAGCCTCTGAAAACACGACTCAGAATACGCTGGCTGTTACAGACATATGCATTA
TTATACCCAGTAAAGGAGAGAGCCCACCACACACATTCTGCAAGGTCGACAAGAATCTCAGCAATAGTAT
GTGGGGATCTGCGGTATACTTATGCTATAAAAAGTCAGTGGCAAAGACTAACACTATATCTTACAAAGCA
GGTCTAATTTGCAGATACCCTCAAGAAGATTACGAGTCGTTCTCACTGCCAGAATCTGTTCCCCTCTTTT
GTTTACCAATGGGGGCAACTATTGAATGCTGGCCACCAGATAGCAAATACCCTCTTCCTGTGTTCTCTAC
CTTTGTGTTAACCGGAGCCTCAGCTGAGAAGGTCTATGGTGCTGCTATTCAGTTTTATGAACCATACCCT
GAGGAGAACCTTACAGAAAAGCAGAGACTTCTGTTGGGTTTAACGTCTCTGGTAGATGGGAAGTCTGATA
GTACTAGAACAATTCACACTAACAAATGCATCTGTCTTCTTTCTCATTGGCCTTTTTTTGATGCATTCAG
AAAATTTCTGACTTTTCTGTATCGTTATTCCATCTCTGGACCTCATGCCCTTCCAATTGAAAAGCATATT
TCTCATTTTATGCATAAAGTTCCCTTTCCATCTCCTCAGAGGCCACGGATTTTAGTTCAGTTATCCCCAC
ATGATAATTTGATTCTCAGTCAGCCTGTTTCTTCCCCTCTTCCATTAAGTGGTGGAAAGTTTTCAACACT
ACTCCAGAATCTTGGCCCTGAGAATGCTGTGACACTGCTGGTGTTTGCTGTAACAGAACATAAAATCCTC
ATCCATTCCCTACGGCCCTCTGTGCTCACCAGTGTGACAGAAGCATTAGTGTCTATGATTTTCCCTTTCC
ACTGGCCCTGCCCGTATGTCCCTCTGTGCCCACTGGCCCTCGCAGACGTCCTCAGTGCACCATGTCCATT
CATAGTAGGCATCGATTCCAGATACTTTGATCTTTATGACCCTCCACCAGATGTTAGTTGTGTCGACTTA
GACACCAACACCATTTCTCAAACTGGGGACAAAAAGAATGTAGCCTGGAAGATTCTCCCAAAGAAGCCAT
GTAAAAATCTGATGAATACACTGAACAATTTACACCAGCAGTTGGCAAAATTGCAGCAGAGACCAAGAGA
TGATGGACTAATGGACTTAGCAATGAATGATTATGATTTTAATTCCGGGAAGAGGTTGCACATGATAGAT
CTGGAAATCCAGGAGGCATTCTTGTTTTTCATGGCCTCTATTTTAAAAGGTTATAGATCATACTTACGGC
CAATAACACAAGCCCCGTCTGAGACAGCGACAGACGCAACCTCTCTTTTTGCCCTTCAAGCTTTCTTAAG
AAGCCGGGACCGGTCACATCAAAAATTCTATAACATGATGACCAAAACACAAATGTTTATTCGCTTCATT
GAGGAATGTTCTTTTGTCAGCGATAAAGATGCAAGCCTGGCCTTTTTTGATGACTGTGTAGATAAAGTGG
ATACAGACAAGAGTGGTGAAGTTCGACTTATAGAACTGGATGCATCTTTCAAAAGTGAACATACCGTTTT
TGTGACACCACCAGAGATCCCCCATCTACCCAATGGTGAAGAGCCACCATTACAGTACAGCTATAATGGA
TTTCCAGTTCTCAGGAACAATTTATTTGAGAGGCCTGAAGGATTTCTACAAGCACGAAAGAACAAACTAC
CTTCAAAACCAAGCAGTCCTGGTAGTCCTTCTCCCATGTTCAGAAGAACAAAACAGGAAATCAAGTCAGC
CCATAAGATCGCAAAGAGGTATTCTTCTATCCCTCAGATGTGGTCTCGGTGTCTGCTGCGTCACTGTTAT
GGATTGTGGTTTATTTGTCTCCCAGCTTACGTGAAGGTTTGTCACTCCAAAGTCAGGGCTCTGAAAACTG
CATACGATGTGCTTAAAAAAATGCAGCTGAAGAAGATGGATCCACCTGATGAGGTGTGCTACCGCATTCT
CATGCAGCTCTGTGGACAGTACGACCAGCCTGTACTTGCGGTTCGAGTGCTTTTTGAAATGCAGAAAGCT
GGTATTGACCCCAATGCAATCACTTATGGATATTATAATAAGGCTGTTTTAGAAAGTACGTGGCCTTCAA
GAAGTCGTAGTGGCTATTTCCTCTGGACAAAAGTAAGAAATGTTGTTTTAGGAGTTGCACAGTTCAAAAG
AGCTTTGAAGAAACATCCACACTTACCACAGACAGCGCTCTCAGGTGGCCGGTCTGATCTTGGATATAAT
TCATTATCTAAGGACAATGTTAGAAGAGAGGGTCCATCTACTGAAGACATTCAAGGGGAAAAGGAGAAAA
GAGGGAGTGATTCTAGTTCCTTGTCAGAAAATGAGAGTACAAAAGGAAGTGCGGAGTGCCTCCCTACTCT
CAGTTACCAGAGGGCTTCCACTATAGTTCGCCTCAACGGTGCACATAACGACAGTGCTGGTAAAACATCC
GGAGAATGTGAGGAAAGCACACCTGAGCTGCTCTTAATGCCATCTCTTGAGGACACAAATGAAGCACAAA
CCACGCCAAGCAGGTGCTTTAGGAAAAGGCATAAAAGTGATGATGGATCTCACTTGCAGCAGCAAATGCC
TTGGGGAAGCAGGAACCGTAATCTCAGTGGTGGGGTACTGATGGGATTCATGCTGAACAGAACTAACCAG
GAAACAAGCCCTGGAGAGATGGTTGAAAAATTAGGAGCTGATGCAAAAATTCTTTCAAATGTTATCTCAA
AAAGCACAAGGCCAAATAGTCTTGATATTGGAAAACCACCCGCAAGATCAAAGAGAGACAGCCTAGAGAA
GGAGTCTAGCGACGATGACACACCTTTCCATGGTTCTAACTGCCTGGATAAAGTCGAGTCTCCTGTTATC
TTTGACTTAGAAGATTTAGACACTGAAACAGATGGATCAAAAGTGGGCGGTGTCGCTGCACAAAATCCCA
AGAGGCTTCAACGTAGGAACAGCAGCTTTTCAGTAAAACCCTCTGAAAAAACAGATGTTGTAACAGGCTT
TGATCCTCTCTCGCTTTTGGTTGCTGAGACTGAGCAGCAGCAGAAAGTGGAAGAGGAAGAGGATGAAGAT
GATAACAAGAGCGTCTCAACACCATCTGCCAGGCGCAATTTAGCTGAAGAAATCGAGATGTACATGAATA
ACATGAGCAGTCCTTTGACAAGCCGCACACCCAGCATTGATTTACAACGAGCATGTGATGACAAGTTAAC
CAATAAGAAAAGCCCAACATTGGTCAAGGCCTGCAGAAGATCAAGCCTGCCTCCTAATTCTCCTAGGCCA
GTGAGACTTACGAAATCCAAAAGTTACACCAAAAGTGAGGAGAGACCCAGGGACAGACTGTGGTCCTCCC
CAGCCTTCTCGCCCACGTGTCCATTTCGGGAAGGATCTCAAGAAACACTAGCCCATTCATCACCTTCATT
TAACTTAGACACACTGCTGGTGCCTAAACTTGATGTCTTAAGGCACAGTGTGTTCACTGCTGGGAAAGGA
GTTGCGGAGAAAGCAAGCAAATGGTACTCAAGGTTCACCATGTACACTACGTCATCAAAGGATCAAAGTT
CTGATCGTACCAGTCTTTCTTCAGTGGGAGCCCAGGATTCTGAATCTACCTCTTTGACAGATGAAGATGT
CTGCCACGAGTTGGAAGGAGCCACTTCCTCCCAAGAAAGCAGTGCGGCTTCGGGAACCAAGGGGATTGAC
GTCAGCAGGGCCAGCCTGGGAAGCTCTGCCTCCTTAGAAGGATCCCTGTCAAAGTTTGCCTTGCCTGGAA
AATCAGAGACTGCATCTTCTCTCAACACCAGTAACGCCAATATCTTCCAGAACTACGCAATGGAGGTTCT
CATCTCAAGTTGTTCTCGGTGTAGGACCTGCGACTGTCTTGTCCATGATGAGGAAATCATGGCTGGCTGG
ACAGCAGATGATTCAAATCTCAATACTACATGTCCATTTTGTGGCAATCTCTTCCTACCCTTTCTGAATG
TTGAAATCAGAGACTTAAGACGACCTGGGAGATATTTCTTGAAGTCCAGCTCATCAACAGAAACTATGCA
CTTTGCAAGTCGGACAAGGCAGTCTTGCATCTCAGCATCGGCCTCTGGTCTTGACACTTCTTCTCTCTCG
GTTCAAGGGAACTTTGATCTAAATAACAAATCTAAACTGCAGGAAAATCCATGTGCCCGAAGTATTCAGA
TCCCTGCTCACAGATCAAAAACTGTTGTGTCAAAATGCCCGCTATTCCCAATGGCCAGAAGCATCAGCAC
ATGTGGCCCCTTGGATAAGGACGATCCCGGAGGACAGAAGCTCATTCCTACAGGCAGCCTGCCAGCGACT
TTACAAGGACATACAGATTCTTTAGGGTTAGAATGGCACCTGCCGAGTCCAGACCCTGTCACTGTCCCAT
ACCTTAGTCCCTTAGTGGTGTGGAAGGAACTTGAGAGCTTATTGGAGAATGAAGGTGACCATGCAATAAC
AGTGGCAGACTTTGTGGACCATCACCCAATTGTCTTTTGGAACCTGGTGTGGTATTTTAGACGCCTCGAC
TTGCCCAGTAACCTGCCTGGACTGATTCTTTCTTCTGAGCATTGTAACAAGTATTCAAAGATTCCCCGCC
ACTGTATGTCTGAAGATAGCAAGTATGTTTTAATACAGATGTTATGGGACAACATGAAATTACATCAGGA
TCCAGGGCAACCCTTGTACATCCTCTGGAATGCCCACAGTCAGAACCGCACTCTTCTGTTTGAGACTCAA
AAGTACCCAATGGTCCATTTGTTACAAAAAGGTGATGACTCCTTTAACCAGGAACTGCTGAAAAGCATGG
TGAAGAGCATTAAAATGAACGATGTCTATGGGCCCATGAGTCAGATTTTAGAGACTCTGAATAAGTGTCC
GCATTTTAAAAGACAGCGGAGTTTATATAGAGAAATATTATTTCTCTCACTTGTGGCACTGGGAAGAGAA
AACATTGATATAGATGCATTTGACAAAGAATACAAGATGGCTTATGATCGTCTCACGCCGAGTCAAGTCA
AGAGTACACATAACTGTGACAGGCCACCAAGTACTGGAGTGATGGAATGCCGAAAAACCTTCGGAGAACC
TTATCTTTAA

Translation (1869 aa):
MIEDKGPRVADYFVVAGLTDISKPLEEEIHFNDACHKVAKPKEPITDVSVIIKSLGEEVPRDYVCIDVTP
TGLSADLNNGSLVGPQIYLCYKRGRDKPPLTDLGVLYDWKERLKQGCEIIQSTPYGRPANISGSTSSQRI
YITYRRASENTTQNTLAVTDICIIIPSKGESPPHTFCKVDKNLSNSMWGSAVYLCYKKSVAKTNTISYKA
GLICRYPQEDYESFSLPESVPLFCLPMGATIECWPPDSKYPLPVFSTFVLTGASAEKVYGAAIQFYEPYP
EENLTEKQRLLLGLTSLVDGKSDSTRTIHTNKCICLLSHWPFFDAFRKFLTFLYRYSISGPHALPIEKHI
SHFMHKVPFPSPQRPRILVQLSPHDNLILSQPVSSPLPLSGGKFSTLLQNLGPENAVTLLVFAVTEHKIL
IHSLRPSVLTSVTEALVSMIFPFHWPCPYVPLCPLALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDL
DTNTISQTGDKKNVAWKILPKKPCKNLMNTLNNLHQQLAKLQQRPRDDGLMDLAMNDYDFNSGKRLHMID
LEIQEAFLFFMASILKGYRSYLRPITQAPSETATDATSLFALQAFLRSRDRSHQKFYNMMTKTQMFIRFI
EECSFVSDKDASLAFFDDCVDKVDTDKSGEVRLIELDASFKSEHTVFVTPPEIPHLPNGEEPPLQYSYNG
FPVLRNNLFERPEGFLQARKNKLPSKPSSPGSPSPMFRRTKQEIKSAHKIAKRYSSIPQMWSRCLLRHCY
GLWFICLPAYVKVCHSKVRALKTAYDVLKKMQLKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKA
GIDPNAITYGYYNKAVLESTWPSRSRSGYFLWTKVRNVVLGVAQFKRALKKHPHLPQTALSGGRSDLGYN
SLSKDNVRREGPSTEDIQGEKEKRGSDSSSLSENESTKGSAECLPTLSYQRASTIVRLNGAHNDSAGKTS
GECEESTPELLLMPSLEDTNEAQTTPSRCFRKRHKSDDGSHLQQQMPWGSRNRNLSGGVLMGFMLNRTNQ
ETSPGEMVEKLGADAKILSNVISKSTRPNSLDIGKPPARSKRDSLEKESSDDDTPFHGSNCLDKVESPVI
FDLEDLDTETDGSKVGGVAAQNPKRLQRRNSSFSVKPSEKTDVVTGFDPLSLLVAETEQQQKVEEEEDED
DNKSVSTPSARRNLAEEIEMYMNNMSSPLTSRTPSIDLQRACDDKLTNKKSPTLVKACRRSSLPPNSPRP
VRLTKSKSYTKSEERPRDRLWSSPAFSPTCPFREGSQETLAHSSPSFNLDTLLVPKLDVLRHSVFTAGKG
VAEKASKWYSRFTMYTTSSKDQSSDRTSLSSVGAQDSESTSLTDEDVCHELEGATSSQESSAASGTKGID
VSRASLGSSASLEGSLSKFALPGKSETASSLNTSNANIFQNYAMEVLISSCSRCRTCDCLVHDEEIMAGW
TADDSNLNTTCPFCGNLFLPFLNVEIRDLRRPGRYFLKSSSSTETMHFASRTRQSCISASASGLDTSSLS
VQGNFDLNNKSKLQENPCARSIQIPAHRSKTVVSKCPLFPMARSISTCGPLDKDDPGGQKLIPTGSLPAT
LQGHTDSLGLEWHLPSPDPVTVPYLSPLVVWKELESLLENEGDHAITVADFVDHHPIVFWNLVWYFRRLD
LPSNLPGLILSSEHCNKYSKIPRHCMSEDSKYVLIQMLWDNMKLHQDPGQPLYILWNAHSQNRTLLFETQ
KYPMVHLLQKGDDSFNQELLKSMVKSIKMNDVYGPMSQILETLNKCPHFKRQRSLYREILFLSLVALGRE
NIDIDAFDKEYKMAYDRLTPSQVKSTHNCDRPPSTGVMECRKTFGEPYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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