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Report for CCDS47636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47636.1 Public Homo sapiens 7 RUNDC3B 24 110 108 CCDS HistoryNCBI Gene:154661Re-query CCDS DB by CCDS ID:47636.1Re-query CCDS DB by GeneID:154661See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47636.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493037.5 ENSP00000420394.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493037.5Link to Ensembl Protein Viewer:ENSP00000420394.1Re-query CCDS DB by Nucleotide ID:ENST00000493037Re-query CCDS DB by Protein ID:ENSP00000420394
Original member Current member NCBI NM_001134406.2 NP_001127878.1 Accepted alive Link to Nucleotide Sequence:NM_001134406.2Link to Protein Sequence:NP_001127878.1Re-query CCDS DB by Nucleotide ID:NM_001134406Re-query CCDS DB by Protein ID:NP_001127878Link to BLAST:NP_001127878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127878.1 407 Q96NL0-4 407 100% 0 0

Chromosomal Locations for CCDS 47636.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 87628824 87628945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87650822 87650937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87700421 87700554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87710570 87710655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87739791 87739880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87741499 87741579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87770581 87770749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87777798 87777955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87816141 87816262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87829885 87830030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGCCTCCCGGAGCCTGGGGGGCCTGAGCGGGATCCGCGGCGGTGGCGGCGGAGGCGGCAAGAAAAGCC
TGAGCGCCCGCAATGCTGCGGTGGAGAGGAGGAACCTGATCACCGTGTGCAGGTTTTCTGTGAAGACCCT
GATTGATCGGTCTTGCTTTGAGACAATTGATGATTCTTCTCCTGAATTTAACAATTTTGCAGCTATTTTG
GAACAGATTTTAAGCCACCGGCTAAAAGGTCAAGTAACCTGGTTTGGTTATGAAAGTCCTCGTAGCTTCT
GGGACTATATCAGAGTGGCTTGCCGGAAAGTTTCACAGAATTGTATCTGCAGCATTGAAAATATGGAAAA
TGTCAGTTCTTCTAGAGCTAAGGGTAGAGCCTGGATCAGAGTAGCACTCATGGAAAAACATTTATCTGAA
TACATCTCTACAGCTCTGAGAGACTTCAAAACAACCAGGAGATTTTATGAAGATGGAGCAATTGTCTTGG
GTGAAGAAGCAAATATGCTTGCTGGCATGCTTCTAGGACTCAATGCTATTGATTTCAGTTTCTGCCTAAA
GGGAGAGGGGCTGGATGGCAGTTTTCCTGCTGTAATAGACTATACACCATATTTGAAGTATATCCAAAGT
TCTGATAGTATCAGCAGTGATGAGGAGGAGCTAAGGACTTTGGGAAGCAGTGGTAGCGAAAGCAGTACTC
CAGAGAATGTCGGACCTCCTTTCCTCATGGATGAGAACAGTTGGTTCAACAAGTGTAAGAGAGTTAAACA
AAAGTATCAGCTTACCCTGGAACAGAAGGGTTACCTTGAAGAACTCTTACGACTTCGAGAGAACCAACTA
TCTGAATCTGTCTCCCAGAATAAAATACTACTTCAAAGGATTGAAGATTCCGATCTGGCTCATAAACTGG
AGAAGGAACAATTAGAATATATAATTGTGGAGCTTCAAGATCAGCTGAAAAGTTATCAAAGTCTTGACCA
GTTATCAGCAGAAGTTAGCCTTTCTCAGACTTCACTAGATCCAGGCCAGTCACAAGAAGGAGATGGAAAA
CAAGACACATTAAATGTAATGAGTGAAGGTAAGGAAGATACTCCCTCATTACTTGGCCTCTGTGGATCTC
TAACGTCAGTGGCAAGTTACAAGTCTCTAACAAGCTTAAAATCTAATGACTACCTTGCAAGTCCTACAAC
AGAGATGACAAGTCCAGGCCTAACTCCATCCTGA

Translation (407 aa):
MASRSLGGLSGIRGGGGGGGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAIL
EQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSE
YISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGSFPAVIDYTPYLKYIQS
SDSISSDEEELRTLGSSGSESSTPENVGPPFLMDENSWFNKCKRVKQKYQLTLEQKGYLEELLRLRENQL
SESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSYQSLDQLSAEVSLSQTSLDPGQSQEGDGK
QDTLNVMSEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDYLASPTTEMTSPGLTPS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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