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Report for CCDS44772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44772.1 Public Homo sapiens 11 PRDM10 24 110 108 CCDS HistoryNCBI Gene:56980Re-query CCDS DB by CCDS ID:44772.1Re-query CCDS DB by GeneID:56980See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423662.6 ENSP00000398431.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423662.6Link to Ensembl Protein Viewer:ENSP00000398431.2Re-query CCDS DB by Nucleotide ID:ENST00000423662Re-query CCDS DB by Protein ID:ENSP00000398431
Original member Current member NCBI NM_199438.2 NP_955470.1 Accepted alive Link to Nucleotide Sequence:NM_199438.2Link to Protein Sequence:NP_955470.1Re-query CCDS DB by Nucleotide ID:NM_199438Re-query CCDS DB by Protein ID:NP_955470Link to BLAST:NP_955470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955470.1 1061 Q9NQV6-1 1061 100% 0 0

Chromosomal Locations for CCDS 44772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 129902313 129902516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129905638 129905741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129910476 129910656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129912124 129912225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129914704 129915018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129915660 129915860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129917127 129917237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129918539 129918718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129923248 129923403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129924882 129925229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129929410 129929421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129931016 129931258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129932102 129932231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129935101 129935218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129937598 129937670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129942426 129942629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129944771 129945012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129947145 129947406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3186 nt):
ATGTCTGCTTACTCTGTGCCTTCAACTTTTGCCCAGGCCTCATTGCCAGTTCATAACCAGGTGCTGCCTT
CCATCGAGAGTGTAGATGGGTCCGACCCTTTGGCAACTCTGCAGACCCCTCTAGGCAGACTGGAGGCCAA
AGAGGAAGAGGATGAGGATGAGGACGAGGACACTGAGGAAGATGAGGAAGAAGACGGTGAGGACACGGAT
CTGGATGACTGGGAGCCAGACCCGCCCCGGCCCTTCGACCCACACGACTTGTGGTGTGAGGAGTGCAATA
ACGCGCATGCTTCAGTGTGTCCGAAGCACGGCCCCTTGCACCCGATCCCCAACCGGCCGGTGCTCACCCG
GGCCAGGGCGAGCCTCCCCCTGGTGCTCTACATAGACAGGTTTCTGGGCGGGGTGTTCTCCAAGCGGCGC
ATCCCCAAGCGCACCCAGTTTGGCCCCGTGGAGGGGCCTCTCGTCAGGGGCTCGGAGCTGAAAGACTGTT
ACATTCACCTCAAGGTTTCTCTTGATAAAGGGGACAGGAAAGAAAGGGATTTACATGAAGACCTATGGTT
TGAGTTGTCTGATGAGACGCTTTGTAACTGGATGATGTTTGTACGGCCAGCCCAGAATCACCTGGAGCAG
AACCTGGTGGCTTACCAGTATGGCCACCATGTGTATTATACAACCATAAAAAATGTGGAGCCCAAGCAGG
AACTGAAGGTGTGGTATGCCGCATCCTATGCTGAGTTCGTGAACCAGAAAATTCATGACATTTCTGAGGA
AGAAAGGAAAGTTCTTCGAGAGCAAGAGAAGAATTGGCCCTGCTATGAATGTAACCGCCGATTTATAAGC
TCGGAGCAGTTGCAACAGCATCTCAATTCTCATGATGAGAAACTAGATGTGTTTAGCAGAACAAGAGGCA
GAGGAAGGGGACGAGGCAAGAGGCGATTCGGTCCAGGTCGACGGCCGGGGCGTCCTCCAAAATTTATCCG
CCTGGAAATCACCAGCGAAAATGGGGAAAAGAGTGACGATGGGACACAGGACTTGCTACATTTTCCCACA
AAGGAGCAATTTGATGAGGCTGAACCAGCCACTCTGAATGGGCTGGATCAACCAGAACAGACCACTATCC
CAATCCCTCAGCTGCCACAGGAAACCCAGTCTTCCCTGGAACATGAACCAGAAACTCACACCCTGCACCT
GCAGCCGCAGCATGAAGAGAGCGTGGTGCCCACCCAGAGCACGCTGACAGCCGACGACATGCGCAGAGCC
AAGCGCATCCGATTGGAGCTGCAGAATGCAGCTCTTCAGCATCTGTTTATTCGGAAGTCCTTCCGGCCTT
TTAAATGCTTGCAGTGTGGGAAGGCCTTCCGGGAAAAGGACAAACTGGACCAGCACTTACGCTTCCATGG
GCGGGAGGGGAACTGCCCACTGACCTGTGATCTCTGTAACAAGGGCTTCATCAGCAGCACATCCTTGGAG
AGCCACATGAAGCTCCACTCAGACCAGAAGACTTACTCTTGCATTTTTTGCCCAGAATCCTTTGACCGCC
TTGATTTGTTGAAAGATCATGTGGCCATTCATATCAATGATGGCTACTTCACCTGCCCAACTTGTAAGAA
ACGGTTCCCAGATTTTATCCAGGTGAAAAAACACGTGCGCAGCTTCCACTCAGAAAAGATCTACCAGTGC
ACAGAGTGTGACAAGGCCTTCTGTCGCCCCGATAAACTGCGACTCCACATGCTCCGGCATTCGGACCGCA
AAGACTTCCTGTGTTCCACCTGTGGGAAGCAATTTAAGCGAAAAGACAAACTACGGGAACACATGCAGAG
GATGCATAATCCTGAGAGGGAGGCCAAGAAAGCCGACCGCATCAGCCGCTCCAAGACGTTCAAGCCCCGC
ATCACGTCCACAGACTACGACAGCTTCACGTTCAAGTGCCGCCTGTGCATGATGGGCTTCCGGCGGCGCG
GCATGCTGGTAAATCACTTATCGAAGAGACACCCAGACATGAAGATAGAAGAGGTGCCAGAGTTAACTCT
ACCCATCATAAAACCCAATCGTGATTACTTTTGTCAGTATTGCGATAAGGTTTATAAAAGTGCCAGCAAG
CGCAAAGCCCACATTCTGAAGAACCACCCAGGAGCAGAGCTCCCACCGAGCATTCGGAAGCTCCGACCCG
CTGGTCCTGGAGAGCCAGACCCCATGCTGAGCACACACACCCAGCTGACGGGCACCATCGCCACCCCTCC
CGTCTGCTGTCCCCACTGCTCCAAGCAGTACAGCAGCAAGACCAAGATGGTCCAGCACATTCGAAAGAAG
CATCCAGAGTTCGCCCAGCTCTCCAACACCATACACACACCACTGACGACAGCTGTGATCAGTGCCACCC
CAGCGGTTTTGACTACAGACAGCGCCACTGGAGAGACTGTGGTGACGACGGACCTGCTCACCCAAGCAAT
GACAGAACTGTCCCAGACCTTAACGACAGACTACCGAACGCCACAAGGGGATTACCAGAGAATTCAGTAC
ATCCCTGTGTCGCAGTCGGCGTCTGGCCTCCAGCAGCCTCAGCACATACAGCTGCAAGTGGTTCAAGTGG
CCTCGGCCACTTCCCCTCACCAGTCACAGCAGTCCACTGTGGATGTTGGCCAGCTCCATGATCCTCAGCC
CTACCCCCAGCACGCCATCCAGGTGCAGCACATCCAGGTATCTGGGCAGCCGTTGAGTCCCTCAGCCCAG
CAGGCTCAGCAGGGGCTCAGCCCCTCCCACATCCAGGGCAGTTCTTCCACACAGGGGCAGGCTCTGCAGC
AGCAGCAGCAGCAGCAGCAGAATTCCTCTGTGCAGCACACGTACCTGCCCAGTGCTTGGAATTCCTTCCG
TGGCTATTCATCTGAGATTCAAATGATGACGCTTCCTCCGGGTCAGTTTGTGATTACAGACAGTGGTGTG
GCAACTCCAGTTACTACTGGCCAGGTGAAGGCGGTTACTTCGGGTCATTATGTGTTATCAGAAAGTCAAT
CAGAATTGGAAGAAAAGCAAACTTCTGCCCTCTCTGGTGGAGTCCAGGTCGAGCCACCTGCACACAGTGA
CTCCCTGGACCCCCAGACCAACAGCCAACAGCAGACCACACAGTACATCATCACCACCACCACCAACGGG
AACGGAAGCAGCGAAGTGCATATCACCAAACCATGA

Translation (1061 aa):
MSAYSVPSTFAQASLPVHNQVLPSIESVDGSDPLATLQTPLGRLEAKEEEDEDEDEDTEEDEEEDGEDTD
LDDWEPDPPRPFDPHDLWCEECNNAHASVCPKHGPLHPIPNRPVLTRARASLPLVLYIDRFLGGVFSKRR
IPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWFELSDETLCNWMMFVRPAQNHLEQ
NLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQKIHDISEEERKVLREQEKNWPCYECNRRFIS
SEQLQQHLNSHDEKLDVFSRTRGRGRGRGKRRFGPGRRPGRPPKFIRLEITSENGEKSDDGTQDLLHFPT
KEQFDEAEPATLNGLDQPEQTTIPIPQLPQETQSSLEHEPETHTLHLQPQHEESVVPTQSTLTADDMRRA
KRIRLELQNAALQHLFIRKSFRPFKCLQCGKAFREKDKLDQHLRFHGREGNCPLTCDLCNKGFISSTSLE
SHMKLHSDQKTYSCIFCPESFDRLDLLKDHVAIHINDGYFTCPTCKKRFPDFIQVKKHVRSFHSEKIYQC
TECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHNPEREAKKADRISRSKTFKPR
ITSTDYDSFTFKCRLCMMGFRRRGMLVNHLSKRHPDMKIEEVPELTLPIIKPNRDYFCQYCDKVYKSASK
RKAHILKNHPGAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTIATPPVCCPHCSKQYSSKTKMVQHIRKK
HPEFAQLSNTIHTPLTTAVISATPAVLTTDSATGETVVTTDLLTQAMTELSQTLTTDYRTPQGDYQRIQY
IPVSQSASGLQQPQHIQLQVVQVASATSPHQSQQSTVDVGQLHDPQPYPQHAIQVQHIQVSGQPLSPSAQ
QAQQGLSPSHIQGSSSTQGQALQQQQQQQQNSSVQHTYLPSAWNSFRGYSSEIQMMTLPPGQFVITDSGV
ATPVTTGQVKAVTSGHYVLSESQSELEEKQTSALSGGVQVEPPAHSDSLDPQTNSQQQTTQYIITTTTNG
NGSSEVHITKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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