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Report for CCDS43350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43350.1 Public Homo sapiens 5 EPB41L4A 24 110 108 CCDS HistoryNCBI Gene:64097Re-query CCDS DB by CCDS ID:43350.1Re-query CCDS DB by GeneID:64097See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43350.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261486.6 ENSP00000261486.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261486.6Link to Ensembl Protein Viewer:ENSP00000261486.5Re-query CCDS DB by Nucleotide ID:ENST00000261486Re-query CCDS DB by Protein ID:ENSP00000261486
Original member Current member NCBI NM_022140.5 NP_071423.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022140.5Link to Protein Sequence:NP_071423.4Re-query CCDS DB by Nucleotide ID:NM_022140Re-query CCDS DB by Protein ID:NP_071423Link to BLAST:NP_071423.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071423.4 686 Q9HCS5 686 100% 0 0

Chromosomal Locations for CCDS 43350.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 112164990 112165118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112168739 112168820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112168995 112169105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112170301 112170369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112170945 112170992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112184016 112184135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112194568 112194645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112195661 112195708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112204375 112204488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112205421 112205504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112209892 112209982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112234634 112234755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112239660 112239737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112240719 112240810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112259229 112259292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112259891 112259979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112262494 112262581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112264896 112265016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112266233 112266330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112275326 112275404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112280272 112280323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112307386 112307490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112418941 112419039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGGCTGTTTCTGCGCTGTTCCGGAAGAATTTTACTGCGAAGTTTTGCTCCTGGATGAATCCAAGTTAA
CCCTTACCACCCAGCAGCAGGGCATCAAGAAGTCAACGAAAGGTTCCGTTGTCCTTGACCACGTATTCCA
TCACGTAAACCTTGTGGAGATAGATTATTTTGGGCTACGTTACTGTGACAGAAGCCATCAGACGTATTGG
CTGGATCCTGCAAAAACCCTTGCTGAACACAAAGAACTGATCAACACTGGACCTCCATATACTTTGTATT
TTGGTATTAAATTCTATGCTGAAGATCCATGTAAACTTAAAGAAGAAATAACCAGATATCAGTTTTTCTT
GCAGGTGAAGCAAGATGTCCTTCAGGGCCGTCTGCCCTGTCCCGTCAACACTGCTGCTCAGCTGGGAGCG
TATGCCATCCAGTCGGAGCTTGGAGATTATGACCCATATAAACATACTGCAGGATATGTATCTGAGTACC
GGTTTGTTCCTGATCAGAAGGAAGAACTTGAAGAAGCCATAGAAAGGATTCATAAAACTCTAATGGGTCA
GATTCCTTCTGAGGCTGAGCTGAATTACTTGAGGACTGCCAAATCCCTGGAGATGTATGGCGTTGACCTC
CATCCCGTCTATGGAGAAAACAAGTCTGAGTATTTCTTAGGATTAACTCCGGTTGGTGTTGTTGTGTACA
AGAATAAAAAGCAAGTGGGGAAGTATTTCTGGCCTCGGATTACAAAGGTTCACTTCAAGGAGACTCAATT
TGAACTCAGAGTACTGGGAAAAGATTGTAACGAAACCTCATTCTTTTTTGAAGCTCGGAGTAAAACTGCT
TGCAAGCACCTCTGGAAGTGCAGTGTGGAACATCATACATTTTTTAGAATGCCAGAAAATGAATCCAATT
CACTGTCAAGAAAACTCAGCAAGTTTGGATCCATACGTTATAAGCACCGCTACAGTGGCAGGACAGCTTT
GCAAATGAGCCGAGATCTTTCTATTCAGCTTCCCCGGCCTGATCAGAATGTGACAAGAAGTCGAAGCAAG
ACTTACCCTAAGCGAATAGCACAAACACAGCCAGCTGAATCAAACAGCATCAGTAGGATAACTGCAAACA
TGGAAAATGGAGAAAATGAAGGAACAATTAAAATTATTGCACCTTCACCAGTAAAAAGCTTTAAGAAAGC
AAAGAATGAAAATAGCCCTGATACCCAAAGAAGCAAATCTCATGCACCGTGGGAAGAAAATGGCCCCCAG
AGTGGACTCTACAATTCTCCCAGTGATCGCACTAAGTCGCCAAAGTTCCCTTACACGCGTCGCCGAAACC
CCTCCTGTGGAAGTGACAATGATTCTGTACAGCCTGTGAGGAGGAGGAAAGCCCATAACAGTGGTGAAGA
TTCAGATCTTAAGCAAAGGAGGAGGTCACGTTCACGCTGTAACACCAGCAGTGGTAGTGAATCAGAAAAT
TCTAATAGAGAATACCGGAAAAAGAGAAACAGAATACGGCAGGAGAATGATATGGTTGATTCAGCGCCTC
AGTGGGAAGCTGTATTAAGGAGACAAAAGGAAAAAAACCAAGCCGACCCCAACAACAGGCGATCCAGACA
CAGATCTCGTTCGAGAAGCCCCGATATCCAAGCAAAAGAAGAGTTATGGAAGCACATTCAAAAAGAACTT
GTGGATCCATCCGGATTGTCCGAAGAACAATTAAAAGAGATTCCATACACTAAAATAGAGACACAAGGTG
ACCCAATCCGCATCAGGCATTCTCATTCGCCACGAAGTTACCGCCAGTATCGCAGGTCCCAGTGTTCAGA
TGGGGAGCGATCAGTTCTCTCGGAAGTGAATTCAAAAACAGATCTTGTACCACCACTTCCGGTGACCCGT
TCTTCGGATGCTCAGGGTTCTGGGGATGCTACAGTTCATCAGAGAAGAAATGGGTCTAAAGATAGCCTGA
TGGAAGAAAAACCTCAGACATCTACAAACAACCTGGCTGGAAAACACACAGCAAAAACAATAAAAACTAT
ACAAGCTTCCCGCCTCAAGACAGAGACTTGA

Translation (686 aa):
MGCFCAVPEEFYCEVLLLDESKLTLTTQQQGIKKSTKGSVVLDHVFHHVNLVEIDYFGLRYCDRSHQTYW
LDPAKTLAEHKELINTGPPYTLYFGIKFYAEDPCKLKEEITRYQFFLQVKQDVLQGRLPCPVNTAAQLGA
YAIQSELGDYDPYKHTAGYVSEYRFVPDQKEELEEAIERIHKTLMGQIPSEAELNYLRTAKSLEMYGVDL
HPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRITKVHFKETQFELRVLGKDCNETSFFFEARSKTA
CKHLWKCSVEHHTFFRMPENESNSLSRKLSKFGSIRYKHRYSGRTALQMSRDLSIQLPRPDQNVTRSRSK
TYPKRIAQTQPAESNSISRITANMENGENEGTIKIIAPSPVKSFKKAKNENSPDTQRSKSHAPWEENGPQ
SGLYNSPSDRTKSPKFPYTRRRNPSCGSDNDSVQPVRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESEN
SNREYRKKRNRIRQENDMVDSAPQWEAVLRRQKEKNQADPNNRRSRHRSRSRSPDIQAKEELWKHIQKEL
VDPSGLSEEQLKEIPYTKIETQGDPIRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTR
SSDAQGSGDATVHQRRNGSKDSLMEEKPQTSTNNLAGKHTAKTIKTIQASRLKTET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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