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Report for CCDS42974.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42974.2 Public Homo sapiens 21 PCBP3 24 110 108 CCDS HistoryNCBI Gene:54039Re-query CCDS DB by CCDS ID:42974.2Re-query CCDS DB by GeneID:54039See the combined annotation on chromosome 21 in Sequence Viewer

Public Note for CCDS 42974.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42974.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400314.5 ENSP00000383168.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400314.5Link to Ensembl Protein Viewer:ENSP00000383168.1Re-query CCDS DB by Nucleotide ID:ENST00000400314Re-query CCDS DB by Protein ID:ENSP00000383168
Original member Current member EBI ENST00000681687.1 ENSP00000505796.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000681687.1Link to Ensembl Protein Viewer:ENSP00000505796.1Re-query CCDS DB by Nucleotide ID:ENST00000681687Re-query CCDS DB by Protein ID:ENSP00000505796
Original member Current member NCBI NM_001382277.1 NP_001369206.1 Accepted alive Link to Nucleotide Sequence:NM_001382277.1Link to Protein Sequence:NP_001369206.1Re-query CCDS DB by Nucleotide ID:NM_001382277Re-query CCDS DB by Protein ID:NP_001369206Link to BLAST:NP_001369206.1
Original member Current member NCBI NM_001382281.1 NP_001369210.1 Accepted alive Link to Nucleotide Sequence:NM_001382281.1Link to Protein Sequence:NP_001369210.1Re-query CCDS DB by Nucleotide ID:NM_001382281Re-query CCDS DB by Protein ID:NP_001369210Link to BLAST:NP_001369210.1
Original member Current member NCBI NM_001382282.1 NP_001369211.1 Accepted alive Link to Nucleotide Sequence:NM_001382282.1Link to Protein Sequence:NP_001369211.1Re-query CCDS DB by Nucleotide ID:NM_001382282Re-query CCDS DB by Protein ID:NP_001369211Link to BLAST:NP_001369211.1
Original member Current member NCBI NM_001382283.1 NP_001369212.1 Accepted alive Link to Nucleotide Sequence:NM_001382283.1Link to Protein Sequence:NP_001369212.1Re-query CCDS DB by Nucleotide ID:NM_001382283Re-query CCDS DB by Protein ID:NP_001369212Link to BLAST:NP_001369212.1
Original member Current member NCBI NM_001382284.1 NP_001369213.1 Accepted alive Link to Nucleotide Sequence:NM_001382284.1Link to Protein Sequence:NP_001369213.1Re-query CCDS DB by Nucleotide ID:NM_001382284Re-query CCDS DB by Protein ID:NP_001369213Link to BLAST:NP_001369213.1
Original member Current member NCBI NM_001382285.1 NP_001369214.1 Accepted alive Link to Nucleotide Sequence:NM_001382285.1Link to Protein Sequence:NP_001369214.1Re-query CCDS DB by Nucleotide ID:NM_001382285Re-query CCDS DB by Protein ID:NP_001369214Link to BLAST:NP_001369214.1
Original member Current member NCBI NM_001382286.1 NP_001369215.1 Accepted alive Link to Nucleotide Sequence:NM_001382286.1Link to Protein Sequence:NP_001369215.1Re-query CCDS DB by Nucleotide ID:NM_001382286Re-query CCDS DB by Protein ID:NP_001369215Link to BLAST:NP_001369215.1
Original member Current member NCBI NM_001382287.1 NP_001369216.1 Accepted alive Link to Nucleotide Sequence:NM_001382287.1Link to Protein Sequence:NP_001369216.1Re-query CCDS DB by Nucleotide ID:NM_001382287Re-query CCDS DB by Protein ID:NP_001369216Link to BLAST:NP_001369216.1
Original member Current member NCBI NM_001382288.1 NP_001369217.1 Accepted alive Link to Nucleotide Sequence:NM_001382288.1Link to Protein Sequence:NP_001369217.1Re-query CCDS DB by Nucleotide ID:NM_001382288Re-query CCDS DB by Protein ID:NP_001369217Link to BLAST:NP_001369217.1
Original member Current member NCBI NM_001384156.1 NP_001371085.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384156.1Link to Protein Sequence:NP_001371085.1Re-query CCDS DB by Nucleotide ID:NM_001384156Re-query CCDS DB by Protein ID:NP_001371085Link to BLAST:NP_001371085.1
Original member Current member NCBI NM_020528.3 NP_065389.2 Accepted alive Link to Nucleotide Sequence:NM_020528.3Link to Protein Sequence:NP_065389.2Re-query CCDS DB by Nucleotide ID:NM_020528Re-query CCDS DB by Protein ID:NP_065389Link to BLAST:NP_065389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369206.1 371 P57721-1 371 100% 0 0
NP_001369210.1 371 P57721-1 371 100% 0 0
NP_001369211.1 371 P57721-1 371 100% 0 0
NP_001369212.1 371 P57721-1 371 100% 0 0
NP_001369213.1 371 P57721-1 371 100% 0 0
NP_001369214.1 371 P57721-1 371 100% 0 0
NP_001369215.1 371 P57721-1 371 100% 0 0
NP_001369216.1 371 P57721-1 371 100% 0 0
NP_001369217.1 371 P57721-1 371 100% 0 0
NP_001371085.1 371 P57721-1 371 100% 0 0
NP_065389.2 371 P57721-1 371 100% 0 0

Chromosomal Locations for CCDS 42974.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 45850086 45850095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45896208 45896362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45899599 45899622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45900591 45900623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45900997 45901113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45909355 45909486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45910902 45911030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45913951 45914025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45917588 45917629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45929917 45929995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45930786 45930845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45935253 45935305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45940030 45940199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45941670 45941706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGGGGAAGGTGACGCCTTCTGGGCCCCATCTGTCCTTCCTCACAGCACCCTCAGCACCTTAAGCCACC
ACCCTCAGCCACAATTTGGCAGAAGGATGGAGTCCAAGGTCTCAGAAGGTGGCCTGAATGTGACCCTCAC
CATCCGCCTGCTGATGCATGGAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACTGTGAAGAAG
ATGCGTGAGGAGAGTGGTGCAAGGATCAACATCTCAGAGGGAAACTGCCCAGAGAGGATTGTGACCATCA
CAGGCCCCACAGACGCCATCTTCAAGGCCTTTGCCATGATCGCATACAAGTTTGAGGAGGATATCATCAA
CTCCATGAGCAACAGCCCTGCCACCAGCAAGCCCCCAGTGACGCTGAGGCTGGTGGTGCCTGCCAGCCAG
TGTGGGTCCCTGATCGGCAAAGGAGGCTCCAAGATCAAGGAGATCAGGGAGTCCACAGGTGCCCAGGTGC
AGGTGGCTGGGGACATGCTGCCCAACTCCACGGAGCGAGCGGTGACCATCTCGGGGACCCCAGATGCCAT
CATCCAGTGCGTCAAGCAGATCTGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTAC
CGCCCAAAGCCCGCCTCCACCCCTGTCATTTTTGCAGGTGGTCAGGCCTACACAATCCAGGGACAGTATG
CCATCCCTCACCCGGATCAGTTGACCAAGCTCCACCAGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCT
CGGACAGACCAACCCCGCTTTCCCCGGAGAAAAGCTGCCTTTACACTCCTCCGAAGAAGCTCAAAATCTG
ATGGGCCAGTCATCAGGTCTGGACGCCAGCCCACCGGCCAGCACTCATGAGCTCACCATTCCCAATGATC
TAATAGGCTGCATAATTGGACGCCAAGGGACCAAAATCAATGAAATTCGACAGATGTCTGGAGCTCAGAT
CAAAATCGCCAACGCCACGGAAGGGTCCTCAGAGCGTCAGATCACCATCACGGGGACCCCGGCCAACATC
AGCCTTGCCCAGTATCTCATCAACGCCAGGCTGACGTCCGAGGTCACCGGGATGGGCACGCTGTAA

Translation (371 aa):
MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKK
MREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQ
CGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY
RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNL
MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI
SLAQYLINARLTSEVTGMGTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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