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Report for CCDS39476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39476.1 Public Mus musculus 6 Zfp398 23 108 98 CCDS HistoryNCBI Gene:272347Re-query CCDS DB by CCDS ID:39476.1Re-query CCDS DB by GeneID:272347See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114598.2 ENSMUSP00000110245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114598.2Link to Ensembl Protein Viewer:ENSMUSP00000110245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114598Re-query CCDS DB by Protein ID:ENSMUSP00000110245
Original member Current member NCBI NM_173034.3 NP_766622.2 Accepted alive Link to Nucleotide Sequence:NM_173034.3Link to Protein Sequence:NP_766622.2Re-query CCDS DB by Nucleotide ID:NM_173034Re-query CCDS DB by Protein ID:NP_766622Link to BLAST:NP_766622.2

Chromosomal Locations for CCDS 39476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47835897 47835920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47858929 47859055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47859419 47859532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47863104 47863217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47865791 47866947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCTGAGGCGACCGCCGCTCCGGTGCCTGTGGCCTTCGATGACGTCTCCATCTACTTTTCCACCCCAG
AG
TGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCT
C
ATCTCCATGGATTATGCCATGAATCAACCTGATGTTTTATCTCAGATTCAACCAGAAGGAGAACACAGT
ACA
GATGACCAGCCAAGGCCAGAAGCAAGTGAGATTCCTGCAGACCCCAGTGAAGAGCCTGGCCTTTCAA
CC
TCAGATATTCTGTCTTGGATTAAACAAGAGGAAGAACCTCAGGTTGGAGTCTCCCAGGAGTCTAAAGA
G
AGTGAGCTGTACAAAGGTACCTATGCTGATGAAGAACTTGTCATCAAAGCTGAAGACCTTGCTAGAGCT
TCC
TTGTGTCCTGAAGTTCCAGTAGCCTTCTCTGCTCCACCACCAGCAGCAGCCAAGGATGCATTTTCAG
AT
ATAGCTTTCAAAAGCCAGCAGTGTACCCCCATGGCACCTTTTGCACGAACGGCCACTGACCTGCCTGA
A
GCTTCAGAGGGACAAGTGACTTTTACTCAGTTAGGAAGTTACCCACTCCCACCTCCAGTTGGAGAGCAG
GTG
TTCTCATGCCACCATTGTGGCAAGAGTCTCAGTCAAGACATGTTAATGACACATCAGTGTGGCCATG
CT
GCTGAACACCCCTTAACCTGTGCCCAGTGTCCTAAGCACTTCACCCCACAAGCAGATGTTGGTAGCAC
C
TCCCAGGATCATGCCAATGAAACACCTCCCACCTGCCCTCACTGCGCCCGGACATTCACTCACCCCTCA
CGA
CTCACATACCACCTTCGGGTACACAACAGCACAGAGCGCCCTTTCCTCTGTCCTGATTGTCCCAAGC
GC
TTCGCTGACCAGGCTCGACTCACCAGCCATCGGCGAGCTCATGCTACTGAGAGGCCCTTTCGTTGCCC
A
CAGTGTGGTCGTAGCTTCAGCCTTAAGATCAGTCTCCTGCTTCATCAGAGGGGACATGCCCAGGAGCGC
CCC
TTCTCCTGTCCTCAGTGTGGCATTGACTTCAATGGCCACTCTGCATTGATTCGTCACCAAATGATCC
AC
ACAGGCGAGCGTCCCTACCCGTGCACAGACTGTAGCAAGAGCTTCATGCGTAAGGAACACTTGCTAAA
C
CACCGGAGGCTGCACACAGGTGAGCGGCCTTTCCAGTGTCCGCACTGCGGCAAGAGCTTCATCCGCAAG
CAT
CACCTCATGAAGCACCAGCGCATCCACACAGGCGAGCGACCATACCCCTGTGCAGTGTGCGGAAGGA
GC
TTCCGCTACAAGCAGACGCTCAAGGACCACCTACGGACCGGTCACAGTGGAGGCTGTGCGGGTGATAG
G
GACCCTTCCGTACAGCCACCAGACCCACCTGGTCCACTCTTAACTGCCCTGGAAACCTCTGGCCTAGGT
GTT
AGCACTGAAGGTCTAGAATCTAGTCAGTGGTATGGGGAAGGGAGTGGAGGGGTGGTTTTATAG


Translation (511 aa):
MAEATAAPVPVAFDDVSIYFSTPEWEKLEEWQKELYKNIMKGNYESLISMDYAMNQPDVLSQIQPEGEHS
T
DDQPRPEASEIPADPSE
EPGLSTSDILSWIKQEEEPQVGVSQESKESELYKGTYADEELVIKAEDLARA
S
LCPEVPVAFSAPPPAAAKDAFSDIAFKSQQCTPMAPFARTATDLPEASEGQVTFTQLGSYPLPPPVGEQ
V
FSCHHCGKSLSQDMLMTHQCGHAAEHPLTCAQCPKHFTPQADVGSTSQDHANETPPTCPHCARTFTHPS
R
LTYHLRVHNSTERPFLCPDCPKRFADQARLTSHRRAHATERPFRCPQCGRSFSLKISLLLHQRGHAQER
P
FSCPQCGIDFNGHSALIRHQMIHTGERPYPCTDCSKSFMRKEHLLNHRRLHTGERPFQCPHCGKSFIRK
H
HLMKHQRIHTGERPYPCAVCGRSFRYKQTLKDHLRTGHSGGCAGDRDPSVQPPDPPGPLLTALETSGLG
V
STEGLESSQWYGEGSGGVVL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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