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Report for CCDS36529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36529.1 Public Mus musculus 12 Ifi27 23 108 98 CCDS HistoryNCBI Gene:52668Re-query CCDS DB by CCDS ID:36529.1Re-query CCDS DB by GeneID:52668See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085065.11 ENSMUSP00000082142.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085065.11Link to Ensembl Protein Viewer:ENSMUSP00000082142.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085065Re-query CCDS DB by Protein ID:ENSMUSP00000082142
Original member Current member NCBI NM_001364173.1 NP_001351102.1 Accepted alive Link to Nucleotide Sequence:NM_001364173.1Link to Protein Sequence:NP_001351102.1Re-query CCDS DB by Nucleotide ID:NM_001364173Re-query CCDS DB by Protein ID:NP_001351102Link to BLAST:NP_001351102.1
Original member Current member NCBI NM_026790.2 NP_081066.2 Accepted alive Link to Nucleotide Sequence:NM_026790.2Link to Protein Sequence:NP_081066.2Re-query CCDS DB by Nucleotide ID:NM_026790Re-query CCDS DB by Protein ID:NP_081066Link to BLAST:NP_081066.2

Chromosomal Locations for CCDS 36529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103435456 103435573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103436563 103436682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103437390 103437524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103437676 103437705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103439401 103439562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103439954 103440171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCGTTTTCGGGCACAGGGACACTGGTGGCTTCCATTGTCTCCAAGATGACATCTTCAGCAGCCATGG
TCAAAGCTGGAGGGGCAGTCTCTGGCACCATTCTAGCTGGTTCGAAGGGGCTCATCCTGTTAACACAGAG
TGCCCTGGGCTCTGCAACATCTGCACTTGGAGCACTGAAGGTTGGCACCATTTTATCTGGGTTCTCTGCC
TCCACCTTGGCTGCTTCCCCCATTGGAGAGGAACCTGCTTTGGTGGGCAGGGAGAAGAAAAGTGACTTCA
GATTTTCCTTCCCCGCAGCAGGCAAAGCAGCAAGAAGGCAGAGAAAGGAAGGACAAAGCAAAATCTACCT
GAAGGGTTTTGAGTTCTCCAGAGCCAAGGCTGTTGTGGCTGTGCTTGGGGGAGCCATGACAGTAGCTGCT
GTACCACCTGCGCTGAGTGCTGTGGGCTTCACCGCCTCAGGAATTGCAGCCTCCTCTCTAGCAGCTAAGA
TGATGTCCTTGTCAGCTATTGCTAATGGGGGTGGAGTCCCAGCTGGTGGCCTGGTGGCCATTCTGCAGTC
TGCTGGAGCTGCTGGACTCTCCGTGCCATCTACTGTCATCGTGGGCTCTGCAGGGTCTGCCGTTGTGGCC
AGTGTCATGAACATCTGTGAGAGTTTCTACCCTTTTCTCATGGGATCAGAGGTGGCAGACATGGCGACAG
AGGTGGCAGATATGGCGATAGAGGTGGCAGACATTTCAACAGAAGAGGCACTGCCCAACTTGTCTAACAC
AGAGAAGGATTAA

Translation (260 aa):
MAFSGTGTLVASIVSKMTSSAAMVKAGGAVSGTILAGSKGLILLTQSALGSATSALGALKVGTILSGFSA
STLAASPIGEEPALVGREKKSDFRFSFPAAGKAARRQRKEGQSKIYLKGFEFSRAKAVVAVLGGAMTVAA
VPPALSAVGFTASGIAASSLAAKMMSLSAIANGGGVPAGGLVAILQSAGAAGLSVPSTVIVGSAGSAVVA
SVMNICESFYPFLMGSEVADMATEVADMAIEVADISTEEALPNLSNTEKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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