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Report for CCDS336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
336.1 Public Homo sapiens 1 MATN1 24 110 108 CCDS HistoryNCBI Gene:4146Re-query CCDS DB by CCDS ID:336.1Re-query CCDS DB by GeneID:4146See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373765.5 ENSP00000362870.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373765.5Link to Ensembl Protein Viewer:ENSP00000362870.4Re-query CCDS DB by Nucleotide ID:ENST00000373765Re-query CCDS DB by Protein ID:ENSP00000362870
Original member Current member NCBI NM_002379.3 NP_002370.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002379.3Link to Protein Sequence:NP_002370.1Re-query CCDS DB by Nucleotide ID:NM_002379Re-query CCDS DB by Protein ID:NP_002370Link to BLAST:NP_002370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002370.1 496 P21941 496 100% 0 0

Chromosomal Locations for CCDS 336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 30713582 30713631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30714247 30714327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30715157 30715309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30715909 30716325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30716790 30716915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30718735 30718957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30721405 30721751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30723458 30723551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGAGGGTCCTCTCTGGCACTAGCCTCATGCTCTGCAGCCTGCTGCTGCTGCTCCAGGCCCTGTGCAGCC
CTGGCCTCGCCCCCCAGTCCAGAGGCCATCTCTGCCGGACGCGGCCCACAGACCTGGTGTTTGTTGTCGA
CAGCTCTCGCAGCGTTCGGCCTGTTGAATTTGAGAAAGTGAAGGTATTCCTGTCCCAGGTCATCGAGTCG
CTGGACGTGGGGCCCAATGCCACCCGGGTGGGCATGGTCAACTATGCCAGCACCGTGAAGCAGGAGTTCT
CGCTGCGGGCTCATGTCTCCAAGGCCGCACTGCTGCAGGCTGTGCGCCGTATCCAGCCGCTGTCCACAGG
CACCATGACCGGCCTGGCCATCCAGTTCGCTATCACCAAAGCCTTCGGCGATGCAGAGGGTGGTCGTTCC
AGGTCCCCTGACATCAGCAAGGTGGTCATCGTGGTGACAGACGGGAGGCCCCAGGACAGCGTGCAGGACG
TGTCTGCGCGGGCCCGGGCCAGCGGCGTCGAGCTGTTCGCCATCGGAGTGGGCAGCGTGGACAAGGCCAC
GCTGCGGCAGATCGCCAGCGAGCCGCAGGACGAACACGTCGATTACGTGGAGAGCTACAGCGTCATCGAG
AAGCTGTCCAGGAAGTTCCAGGAGGCCTTCTGCGTGGTGTCAGACCTGTGCGCCACAGGGGACCATGACT
GTGAGCAGGTGTGCATCAGCTCCCCCGGTTCCTACACCTGCGCCTGCCACGAGGGCTTCACTCTGAACAG
CGACGGCAAGACCTGCAATGTCTGCAGTGGTGGTGGTGGCAGCTCGGCCACTGACCTGGTCTTCCTCATT
GACGGATCCAAGAGTGTGAGGCCAGAGAACTTTGAGCTGGTGAAGAAGTTCATCAGTCAGATCGTGGATA
CGCTGGACGTGTCAGACAAGCTGGCCCAGGTGGGGCTGGTGCAGTACTCAAGCTCTGTGCGCCAGGAGTT
CCCCCTGGGTCGCTTCCACACCAAGAAGGACATCAAGGCGGCTGTGCGGAATATGTCCTACATGGAGAAG
GGCACAATGACTGGGGCTGCTCTCAAGTACCTCATTGACAATTCCTTCACTGTGTCCAGTGGGGCTAGGC
CCGGGGCCCAGAAGGTGGGCATTGTCTTCACTGATGGCCGGAGCCAGGACTACATTAATGATGCTGCCAA
GAAGGCCAAAGACCTCGGCTTTAAGATGTTTGCTGTGGGTGTGGGCAATGCCGTGGAGGATGAGCTGAGG
GAAATAGCCTCAGAGCCTGTGGCAGAGCACTACTTCTACACGGCTGACTTCAAGACCATCAACCAGATAG
GCAAGAAGTTGCAGAAGAAGATCTGTGTGGAGGAAGACCCGTGTGCCTGCGAGTCCCTGGTGAAATTCCA
AGCCAAAGTGGAGGGGCTGCTGCAGGCCCTGACCAGGAAACTGGAAGCTGTGAGTAAGCGGCTGGCCATC
CTGGAGAACACAGTTGTCTAA

Translation (496 aa):
MRVLSGTSLMLCSLLLLLQALCSPGLAPQSRGHLCRTRPTDLVFVVDSSRSVRPVEFEKVKVFLSQVIES
LDVGPNATRVGMVNYASTVKQEFSLRAHVSKAALLQAVRRIQPLSTGTMTGLAIQFAITKAFGDAEGGRS
RSPDISKVVIVVTDGRPQDSVQDVSARARASGVELFAIGVGSVDKATLRQIASEPQDEHVDYVESYSVIE
KLSRKFQEAFCVVSDLCATGDHDCEQVCISSPGSYTCACHEGFTLNSDGKTCNVCSGGGGSSATDLVFLI
DGSKSVRPENFELVKKFISQIVDTLDVSDKLAQVGLVQYSSSVRQEFPLGRFHTKKDIKAAVRNMSYMEK
GTMTGAALKYLIDNSFTVSSGARPGAQKVGIVFTDGRSQDYINDAAKKAKDLGFKMFAVGVGNAVEDELR
EIASEPVAEHYFYTADFKTINQIGKKLQKKICVEEDPCACESLVKFQAKVEGLLQALTRKLEAVSKRLAI
LENTVV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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