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Report for CCDS28687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28687.1 Public Mus musculus 17 Apom 23 108 98 CCDS HistoryNCBI Gene:55938Re-query CCDS DB by CCDS ID:28687.1Re-query CCDS DB by GeneID:55938See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025249.6 ENSMUSP00000025249.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025249.6Link to Ensembl Protein Viewer:ENSMUSP00000025249.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025249Re-query CCDS DB by Protein ID:ENSMUSP00000025249
Original member Current member NCBI NM_018816.2 NP_061286.1 Accepted alive Link to Nucleotide Sequence:NM_018816.2Link to Protein Sequence:NP_061286.1Re-query CCDS DB by Nucleotide ID:NM_018816Re-query CCDS DB by Protein ID:NP_061286Link to BLAST:NP_061286.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061286.1 190 Q9Z1R3 190 100% 0 0

Chromosomal Locations for CCDS 28687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35129110 35129135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35130080 35130178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35130408 35130506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35130839 35130918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35131195 35131349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35131610 35131723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGTTCCACCAAGTTTGGGCAGCTCTGCTCTCTCTCTATGGCCTTCTCTTTAACTCCATGAATCAGTGCC
CTGAGCACAGTCAACTAACTGCGCTGGGAATGGACGACACAGAGACCCCAGAGCCCCACCTGGGCCTGTG
GTACTTTATTGCGGGAGCAGCCTCCACCACGGAAGAGTTGGCAACTTTTGATCCGGTGGACAATATTGTC
TTCAACATGGCTGCCGGCTCTGCCCCAAGGCAGCTCCAGCTTCGTGCTACCATCCGCACGAAAAGTGGGG
TCTGTGTGCCCCGGAAGTGGACATACCGATTGACTGAAGGGAAAGGAAACATGGAACTCAGAACTGAAGG
GCGCCCAGACATGAAAACAGACCTGTTCTCCAGCTCGTGCCCAGGAGGAATCATGCTGAAAGAGACGGGC
CAGGGCTACCAGCGCTTTCTCCTCTACAATCGGTCACCACACCCTCCAGAGAAGTGTGTGGAGGAATTCC
AGTCTCTGACCTCTTGCTTGGACTTCAAAGCCTTCTTAGTGACTCCCAGGAATCAAGAGGCCTGCCCGCT
GTCCAGCAAGTGA

Translation (190 aa):
MFHQVWAALLSLYGLLFNSMNQCPEHSQLTALGMDDTETPEPHLGLWYFIAGAASTTEELATFDPVDNIV
FNMAAGSAPRQLQLRATIRTKSGVCVPRKWTYRLTEGKGNMELRTEGRPDMKTDLFSSSCPGGIMLKETG
QGYQRFLLYNRSPHPPEKCVEEFQSLTSCLDFKAFLVTPRNQEACPLSSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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